<tools xmlns="biotoolsSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="biotoolsSchema file:///E:/repos/GitHub/biotoolsShim/genericxml2xml-singletool/versions/biotools-3.3.0/biotools_3.3.0.xsd"><tool><name>ggtree</name><description>Extend the 'ggplot2' plotting system which implemented the grammar of graphics. It is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.</description><homepage>http://bioconductor.org/packages/release/bioc/html/ggtree.html</homepage><biotoolsID>ggtree</biotoolsID><biotoolsCURIE>biotools:ggtree</biotoolsCURIE><version>1.6.6</version><toolType>Command-line tool</toolType><toolType>Library</toolType><topic><uri>http://edamontology.org/topic_0084</uri><term>Phylogeny</term></topic><topic><uri>http://edamontology.org/topic_0092</uri><term>Data visualisation</term></topic><operatingSystem>Linux</operatingSystem><operatingSystem>Windows</operatingSystem><operatingSystem>Mac</operatingSystem><language>R</language><license>Artistic-2.0</license><collectionID>BioConductor</collectionID><function><operation><uri>http://edamontology.org/operation_0567</uri><term>Phylogenetic tree visualisation</term></operation><operation><uri>http://edamontology.org/operation_0558</uri><term>Phylogenetic tree annotation</term></operation><input><data><uri>http://edamontology.org/data_0872</uri><term>Phylogenetic tree</term></data><format><uri>http://edamontology.org/format_2006</uri><term>Phylogenetic tree format</term></format><format><uri>http://edamontology.org/format_1912</uri><term>Nexus format</term></format><format><uri>http://edamontology.org/format_1435</uri><term>Phylip tree format</term></format><format><uri>http://edamontology.org/format_1910</uri><term>newick</term></format></input><output><data><uri>http://edamontology.org/data_0872</uri><term>Phylogenetic tree</term></data><format><uri>http://edamontology.org/format_2006</uri><term>Phylogenetic tree format</term></format><format><uri>http://edamontology.org/format_3547</uri><term>Image format</term></format></output><output><data><uri>http://edamontology.org/data_1707</uri><term>Phylogenetic tree image</term></data><format><uri>http://edamontology.org/format_2006</uri><term>Phylogenetic tree format</term></format><format><uri>http://edamontology.org/format_3547</uri><term>Image format</term></format></output></function><link><url>https://guangchuangyu.github.io/ggtree</url><type>Mirror</type></link><download><url>http://bioconductor/packages/release/bioc/src/contrib/ggtree_1.6.6.tar.gz</url><type>Source code</type></download><documentation><url>http://bioconductor.org/packages/release/bioc/html/ggtree.html</url><type>User manual</type></documentation><publication><doi>10.1111/2041-210X.12628</doi><type>Primary</type></publication><credit><name>Guangchuang Yu</name><email>guangchuangyu@gmail.com</email><typeEntity>Person</typeEntity><typeRole>Primary contact</typeRole></credit></tool></tools>