{"name":"Graphia","description":"A platform for the graph-based visualisation and analysis of complex data.\n\nVisualisation tool for the creation and analysis of graphs.\n\nGraphia is a powerful open source visual analytics application developed to aid the interpretation of large and complex datasets.\n\nGraphia can create and visualise graphs from tables of numeric data and display the structures that result. It can also be used to visualise and analyse any data that is already in the form of a graph.","homepage":"https://graphia.app/","biotoolsID":"graphia","biotoolsCURIE":"biotools:graphia","version":[],"otherID":[],"relation":[],"function":[{"operation":[{"uri":"http://edamontology.org/operation_0337","term":"Visualisation"},{"uri":"http://edamontology.org/operation_3196","term":"Genotyping"},{"uri":"http://edamontology.org/operation_3463","term":"Expression correlation analysis"},{"uri":"http://edamontology.org/operation_3629","term":"Deisotoping"},{"uri":"http://edamontology.org/operation_0306","term":"Text mining"},{"uri":"http://edamontology.org/operation_3927","term":"Network analysis"},{"uri":"http://edamontology.org/operation_3925","term":"Network visualisation"},{"uri":"http://edamontology.org/operation_3501","term":"Enrichment analysis"}],"input":[{"data":{"uri":"http://edamontology.org/data_3112","term":"Gene expression matrix"},"format":[{"uri":"http://edamontology.org/format_3620","term":"xlsx"},{"uri":"http://edamontology.org/format_3752","term":"CSV"},{"uri":"http://edamontology.org/format_3475","term":"TSV"}]},{"data":{"uri":"http://edamontology.org/data_2600","term":"Pathway or network"},"format":[{"uri":"http://edamontology.org/format_3822","term":"GML"},{"uri":"http://edamontology.org/format_3617","term":"Graph format"}]}],"output":[{"data":{"uri":"http://edamontology.org/data_2600","term":"Pathway or network"},"format":[{"uri":"http://edamontology.org/format_3822","term":"GML"},{"uri":"http://edamontology.org/format_3603","term":"PNG"},{"uri":"http://edamontology.org/format_3579","term":"JPG"},{"uri":"http://edamontology.org/format_3508","term":"PDF"},{"uri":"http://edamontology.org/format_3617","term":"Graph format"}]}],"note":null,"cmd":null}],"toolType":["Desktop application"],"topic":[{"uri":"http://edamontology.org/topic_0121","term":"Proteomics"},{"uri":"http://edamontology.org/topic_3172","term":"Metabolomics"},{"uri":"http://edamontology.org/topic_3308","term":"Transcriptomics"},{"uri":"http://edamontology.org/topic_0625","term":"Genotype and phenotype"},{"uri":"http://edamontology.org/topic_0092","term":"Data visualisation"},{"uri":"http://edamontology.org/topic_0091","term":"Bioinformatics"}],"operatingSystem":["Windows","Mac","Linux"],"language":["C++"],"license":"GPL-3.0","collectionID":["pathway or network visualisation"],"maturity":"Mature","cost":"Free of charge","accessibility":"Open access","elixirPlatform":[],"elixirNode":[],"elixirCommunity":[],"link":[{"url":"https://github.com/graphia-app/graphia/discussions","type":["Discussion forum"],"note":null},{"url":"https://github.com/graphia-app/graphia/issues","type":["Issue tracker"],"note":null},{"url":"https://github.com/graphia-app","type":["Repository"],"note":null}],"download":[{"url":"https://graphia.app/download.html","type":"Downloads page","note":null,"version":null}],"documentation":[{"url":"https://graphia.app/userguide.html","type":["User manual"],"note":null}],"publication":[{"doi":"10.1101/2020.09.02.279349","pmid":null,"pmcid":null,"type":[],"version":null,"note":null,"metadata":null}],"credit":[{"name":"Tom C. Freeman","email":"tom.freeman@roslin.ed.ac.uk","url":null,"orcidid":null,"gridid":null,"rorid":null,"fundrefid":null,"typeEntity":"Person","typeRole":[],"note":null},{"name":"Tim Angus","email":"tim@graphia.app","url":null,"orcidid":null,"gridid":null,"rorid":null,"fundrefid":null,"typeEntity":"Person","typeRole":[],"note":null},{"name":null,"email":"info@graphia.app","url":null,"orcidid":null,"gridid":null,"rorid":null,"fundrefid":null,"typeEntity":"Project","typeRole":["Support"],"note":null}],"owner":"Niclaskn","additionDate":"2021-01-18T10:54:18Z","lastUpdate":"2021-10-13T13:14:59.793273Z","editPermission":{"type":"group","authors":["timangus"]},"validated":1,"homepage_status":0,"elixir_badge":0,"confidence_flag":"tool"}