{"name":"HHpred","description":"Based on the comparison of profile HMMs, HHpred takes a protein sequence or multiple sequence alignment as input and searches for remote homologues in an assortment of databases such as PDB, SMART and Pfam.  The user can select either a local or global alignment method, and the search results can be used to generate  3D structural models.","homepage":"https://toolkit.tuebingen.mpg.de/#/tools/hhpred","biotoolsID":"hhpred","biotoolsCURIE":"biotools:hhpred","version":[],"otherID":[],"relation":[],"function":[{"operation":[{"uri":"http://edamontology.org/operation_0492","term":"Multiple sequence alignment"},{"uri":"http://edamontology.org/operation_0259","term":"Sequence alignment comparison"},{"uri":"http://edamontology.org/operation_0496","term":"Global alignment"}],"input":[],"output":[],"note":null,"cmd":null}],"toolType":["Web application"],"topic":[{"uri":"http://edamontology.org/topic_0160","term":"Sequence sites, features and motifs"},{"uri":"http://edamontology.org/topic_0078","term":"Proteins"},{"uri":"http://edamontology.org/topic_0080","term":"Sequence analysis"},{"uri":"http://edamontology.org/topic_0749","term":"Transcription factors and regulatory sites"}],"operatingSystem":["Linux","Windows","Mac"],"language":[],"license":null,"collectionID":[],"maturity":null,"cost":null,"accessibility":null,"elixirPlatform":[],"elixirNode":[],"elixirCommunity":[],"link":[],"download":[],"documentation":[{"url":"https://toolkit.tuebingen.mpg.de/#/tools/hhpred","type":["General"],"note":null}],"publication":[{"doi":"10.1093/nar/gki408","pmid":"15980461","pmcid":"PMC1160169","type":[],"version":null,"note":null,"metadata":null}],"credit":[{"name":"Johannes Söding","email":"soeding@mpibpc.mpg.de","url":null,"orcidid":null,"gridid":null,"rorid":null,"fundrefid":null,"typeEntity":"Person","typeRole":["Primary contact"],"note":null}],"owner":"ELIXIR-EE","additionDate":"2017-02-10T11:34:22Z","lastUpdate":"2024-11-25T15:01:00.845499Z","editPermission":{"type":"private","authors":[]},"validated":1,"homepage_status":0,"elixir_badge":0,"confidence_flag":null}