HHpredBased on the comparison of profile HMMs, HHpred takes a protein sequence or multiple sequence alignment as input and searches for remote homologues in an assortment of databases such as PDB, SMART and Pfam. The user can select either a local or global alignment method, and the search results can be used to generate 3D structural models.https://toolkit.tuebingen.mpg.de/#/tools/hhpredhhpredbiotools:hhpredWeb applicationhttp://edamontology.org/topic_0160Sequence sites, features and motifshttp://edamontology.org/topic_0078Proteinshttp://edamontology.org/topic_0080Sequence analysishttp://edamontology.org/topic_0749Transcription factors and regulatory sitesLinuxWindowsMachttp://edamontology.org/operation_0492Multiple sequence alignmenthttp://edamontology.org/operation_0259Sequence alignment comparisonhttp://edamontology.org/operation_0496Global alignmenthttps://toolkit.tuebingen.mpg.de/#/tools/hhpredGeneral10.1093/nar/gki40815980461PMC1160169Johannes Södingsoeding@mpibpc.mpg.dePersonPrimary contact