MUSCLEThis tool performs multiple sequence alignments of nucleotide or amino acid sequences.https://www.drive5.com/muscle/musclebiotools:muscle5Command-line toolWeb APIhttp://edamontology.org/topic_0080Sequence analysisLinuxWindowsMacOtherMUSCLEgalaxyPasteurBioConductorMatureFree of chargeOpen accesshttp://edamontology.org/operation_0492Multiple sequence alignmenthttp://edamontology.org/data_3494DNA sequencehttp://edamontology.org/format_1948nbrf/pirhttp://edamontology.org/format_1929FASTAhttp://edamontology.org/format_1935GCGhttp://edamontology.org/format_1997PHYLIP formathttp://edamontology.org/format_1927EMBL formathttp://edamontology.org/format_1936GenBank formathttp://edamontology.org/data_3495RNA sequencehttp://edamontology.org/format_1948nbrf/pirhttp://edamontology.org/format_1929FASTAhttp://edamontology.org/format_1935GCGhttp://edamontology.org/format_1997PHYLIP formathttp://edamontology.org/format_1927EMBL formathttp://edamontology.org/format_1936GenBank format

http://edamontology.org/data_0863Sequence alignmenthttp://edamontology.org/format_1982ClustalW formathttp://edamontology.org/format_2331HTMLhttp://edamontology.org/format_1997PHYLIP formathttp://edamontology.org/format_1947GCG MSFhttp://edamontology.org/format_1929FASTA

https://www.biocatalogue.org/services/3135Software cataloguehttps://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/oneclick_phylogeny/muscle/3.8.31.1Galaxy servicehttp://bioconductor/packages/release/bioc/src/contrib/muscle_3.16.0.tar.gzSource codeBioConductor packagehttps://www.ebi.ac.uk/seqdb/confluence/display/WEBSERVICES/muscle_restAPI specificationEBI MUSCLE Web Servicehttps://www.drive5.com/muscle/downloads.htmDownloads pagehttp://bioconductor.org/packages/release/bioc/html/muscle.htmlUser manualBioConductor package documentationhttps://www.ebi.ac.uk/seqdb/confluence/display/WEBSERVICES/muscle_restAPI documentationEBI Web Service documentationhttps://www.drive5.com/muscle/manual/User manualhttps://www.drive5.com/muscle/manual/install.htmlInstallation instructions10.1093/nar/gkh34015034147PMC390337Primary10.7490/f1000research.1114334.1Primary510.1186/1471-2105-5-11315318951PMC517706Other10.1101/2021.06.20.449169Primary5Alex T. Kalinkaalex.t.kalinka@gmail.comPersonMaintainerMaintainer of the BioConductor packagehttp://www.ebi.ac.uk/support/PersonPrimary contactEBI Web Service supportTechnical Supporthttps://www.drive5.com/muscle/manual/support.htmlRobert Edgarrobert@drive5.comPersonPrimary contactDeveloper