Formathttp://edamontology.org/format_1915Textual format.Textual formatPlain text formattxthttp://edamontology.org/format_2330Chemical structure specified in Simplified Molecular Input Line Entry System (SMILES) line notation.SMILEShttp://edamontology.org/format_1196SMILES ARbitrary Target Specification (SMARTS) format for chemical structure specification, which is a subset of the SMILES line notation.smartshttp://edamontology.org/format_1200Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation.InChIhttp://edamontology.org/format_1197Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound.mfhttp://edamontology.org/format_1198The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound.InChIKeyhttp://edamontology.org/format_1199Alphabet for a nucleotide sequence with possible ambiguity, unknown positions and non-sequence characters.nucleotidehttp://edamontology.org/format_1207Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.pure nucleotidehttp://edamontology.org/format_1210Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence with possible ambiguity, unknown positions and non-sequence characters.dnahttp://edamontology.org/format_1212Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence with possible ambiguity, unknown positions and non-sequence characters.rnahttp://edamontology.org/format_1213Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a protein sequence with possible ambiguity, unknown positions and non-sequence characters.proteinhttp://edamontology.org/format_1208Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.pure proteinhttp://edamontology.org/format_1219Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_2607Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank database.EMBL feature locationFeature locationhttp://edamontology.org/format_1248Report format for tandem repeats in a nucleotide sequence (format generated by the Sanger Centre quicktandem program).quicktandemhttp://edamontology.org/format_1295Report format for inverted repeats in a nucleotide sequence (format generated by the Sanger Centre inverted program).Sanger inverted repeatshttp://edamontology.org/format_1296Report format for tandem repeats in a sequence (an EMBOSS report format).EMBOSS repeathttp://edamontology.org/format_1297Format of a report on exon-intron structure generated by EMBOSS est2genome.est2genome formathttp://edamontology.org/format_1316Report format for restriction enzyme recognition sites used by EMBOSS restrict program.restrict formathttp://edamontology.org/format_1318Report format for restriction enzyme recognition sites used by EMBOSS restover program.restover formathttp://edamontology.org/format_1319Report format for restriction enzyme recognition sites used by REBASE database.REBASE restriction siteshttp://edamontology.org/format_1320Format of results of a sequence database search using FASTA.FASTA search results formathttp://edamontology.org/format_1332Format of results of a sequence database search using some variant of BLAST.BLAST resultshttp://edamontology.org/format_1333XML format as produced by the NCBI Blast packageBLAST XML results formathttp://edamontology.org/format_3331Format of results of a sequence database search using some variant of MSPCrunch.mspcrunchhttp://edamontology.org/format_1334Format of results of a sequence database search using some variant of Smith Waterman.Smith-Waterman formathttp://edamontology.org/format_1335Format of EMBASSY domain hits file (DHF) of hits (sequences) with domain classification information.dhfhttp://edamontology.org/format_1336Format of EMBASSY ligand hits file (LHF) of database hits (sequences) with ligand classification information.lhfhttp://edamontology.org/format_1337Results format for searches of the InterPro database.InterPro hits formathttp://edamontology.org/format_1341Format of results of a search of the InterPro database showing matches of query protein sequence(s) to InterPro entries.InterPro protein view report formathttp://edamontology.org/format_1342Format of results of a search of the InterPro database showing matches between protein sequence(s) and signatures for an InterPro entry.InterPro match table formathttp://edamontology.org/format_1343Dirichlet distribution HMMER format.HMMER Dirichlet priorhttp://edamontology.org/format_1349Dirichlet distribution MEME format.MEME Dirichlet priorhttp://edamontology.org/format_1350Format of a report from the HMMER package on the emission and transition counts of a hidden Markov model.HMMER emission and transitionhttp://edamontology.org/format_1351Format of a regular expression pattern from the Prosite database.prosite-patternhttp://edamontology.org/format_1356Format of an EMBOSS sequence pattern.EMBOSS sequence patternhttp://edamontology.org/format_1357A motif in the format generated by the MEME program.meme-motifhttp://edamontology.org/format_1360Sequence profile (sequence classifier) format used in the PROSITE database.prosite-profilehttp://edamontology.org/format_1366A profile (sequence classifier) in the format used in the JASPAR database.JASPAR formathttp://edamontology.org/format_1367Format of the model of random sequences used by MEME.MEME background Markov modelhttp://edamontology.org/format_1369Format of a hidden Markov model representation used by the HMMER package.HMMER formathttp://edamontology.org/format_1370HMMER profile HMM file for HMMER versions 2.xHMMER2http://edamontology.org/format_3328HMMER profile HMM file for HMMER versions 3.xHMMER3http://edamontology.org/format_3329FASTA-style format for multiple sequences aligned by HMMER package to an HMM.HMMER-alnhttp://edamontology.org/format_1391Format of multiple sequences aligned by DIALIGN package.DIALIGN formathttp://edamontology.org/format_1392EMBASSY 'domain alignment file' (DAF) format, containing a sequence alignment of protein domains belonging to the same SCOP or CATH family.dafhttp://edamontology.org/format_1393Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package.Sequence-MEME profile alignmenthttp://edamontology.org/format_1419Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database.HMMER profile alignment (sequences versus HMMs)http://edamontology.org/format_1421Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database.HMMER profile alignment (HMM versus sequences)http://edamontology.org/format_1422Format of PHYLIP phylogenetic distance matrix data.Phylip distance matrixhttp://edamontology.org/format_1423Dendrogram (tree file) format generated by ClustalW.ClustalW dendrogramhttp://edamontology.org/format_1424Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted.Phylip tree rawhttp://edamontology.org/format_1425PHYLIP file format for continuous quantitative character data.Phylip continuous quantitative charactershttp://edamontology.org/format_1430PHYLIP file format for phylogenetics character frequency data.Phylip character frequencies formathttp://edamontology.org/format_1432Format of PHYLIP discrete states data.Phylip discrete states formathttp://edamontology.org/format_1433Format of PHYLIP cliques data.Phylip cliques formathttp://edamontology.org/format_1434Phylogenetic tree data format used by the PHYLIP program.Phylip tree formathttp://edamontology.org/format_1435The format of an entry from the TreeBASE database of phylogenetic data.TreeBASE formathttp://edamontology.org/format_1436The format of an entry from the TreeFam database of phylogenetic data.TreeFam formathttp://edamontology.org/format_1437Format for distances, such as Branch Score distance, between two or more phylogenetic trees as used by the Phylip package.Phylip tree distance formathttp://edamontology.org/format_1445Format of an entry from the DSSP database (Dictionary of Secondary Structure in Proteins).dssphttp://edamontology.org/format_1454Entry format of the HSSP database (Homology-derived Secondary Structure in Proteins).hssphttp://edamontology.org/format_1455Format of RNA secondary structure in dot-bracket notation, originally generated by the Vienna RNA package/server.Dot-bracket formatVienna RNA secondary structure formatVienna RNA formathttp://edamontology.org/format_1457Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server.Vienna local RNA secondary structure formathttp://edamontology.org/format_1458Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server.Vienna local RNA secondary structure formathttp://edamontology.org/format_1458Entry format of PDB database in PDB format.PDBPDB formathttp://edamontology.org/format_1476Entry format of PDB database in mmCIF format.mmCIFmmcifhttp://edamontology.org/format_1477Amino acid index format used by the AAindex database.aaindexhttp://edamontology.org/format_1504Format of output of the Pcons Model Quality Assessment Program (MQAP).Pcons report formathttp://edamontology.org/format_1551Format of output of the ProQ protein model quality predictor.ProQ report formathttp://edamontology.org/format_1552A report format for the kinetics of enzyme-catalysed reaction(s) in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax).findkmhttp://edamontology.org/format_1582Report format on PCR primers and hybridisation oligos as generated by Whitehead primer3 program.Primer3 primerhttp://edamontology.org/format_1627Format of MIRA sequence trace information file.mirahttp://edamontology.org/format_1629Common Assembly Format (CAF). A sequence assembly format including contigs, base-call qualities, and other metadata.CAFhttp://edamontology.org/format_1630Sequence assembly project file EXP format.exphttp://edamontology.org/format_1631PHD sequence trace format to store serialised chromatogram data (reads).PHDhttp://edamontology.org/format_1633Format of Affymetrix data file of raw image data.datAffymetrix image data file formathttp://edamontology.org/format_1637Format of Affymetrix data file of information about (raw) expression levels of the individual probes.celAffymetrix probe raw data formathttp://edamontology.org/format_1638Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) from hierarchical clustering.affymetrixhttp://edamontology.org/format_1639Affymetrix data file format for information about experimental conditions and protocols.affymetrix-expAffymetrix experimental conditions data file formathttp://edamontology.org/format_1641Format of Affymetrix data file of information about (normalised) expression levels of the individual probes.CHPAffymetrix probe normalised data formathttp://edamontology.org/format_1644The format of an entry from the HET group dictionary (HET groups from PDB files).HET group dictionary entry formathttp://edamontology.org/format_1705Format of bibliographic reference as used by the PubMed database.PubMed citationhttp://edamontology.org/format_1734Format for abstracts of scientific articles from the Medline database.Medline Display Formathttp://edamontology.org/format_1735CiteXplore 'core' citation format including title, journal, authors and abstract.CiteXplore-corehttp://edamontology.org/format_1736CiteXplore 'all' citation format includes all known details such as Mesh terms and cross-references.CiteXplore-allhttp://edamontology.org/format_1737Article format of the PubMed Central database.pmchttp://edamontology.org/format_1739OSCAR format of annotated chemical text.OSCAR formathttp://edamontology.org/format_1741Map of a plasmid (circular DNA) in PlasMapper TextMap format.PlasMapper TextMaphttp://edamontology.org/format_1861Phylogenetic tree Newick (text) format.newicknhhttp://edamontology.org/format_1910Phylogenetic tree TreeCon (text) format.TreeCon formathttp://edamontology.org/format_1911Phylogenetic tree Nexus (text) format.Nexus formathttp://edamontology.org/format_1912Codata entry format.codatahttp://edamontology.org/format_1925Staden experiment file format.Staden experiment formathttp://edamontology.org/format_1928Fitch program format.fitch programhttp://edamontology.org/format_1934GCG sequence file format.GCGGCG SSFhttp://edamontology.org/format_1935Hennig86 output sequence format.hennig86http://edamontology.org/format_1941Intelligenetics sequence format.ighttp://edamontology.org/format_1942Intelligenetics sequence format (strict version).igstricthttp://edamontology.org/format_1943Jackknifer interleaved and non-interleaved sequence format.jackkniferhttp://edamontology.org/format_1944Mase program sequence format.mase formathttp://edamontology.org/format_1945Mega interleaved and non-interleaved sequence format.mega-seqhttp://edamontology.org/format_1946NBRF/PIR entry sequence format.nbrf/pirnbrfpirhttp://edamontology.org/format_1948Nexus/paup interleaved sequence format.nexus-seqhttp://edamontology.org/format_1949PDB sequence format (ATOM lines).pdbatomhttp://edamontology.org/format_1950PDB nucleotide sequence format (ATOM lines).pdbatomnuchttp://edamontology.org/format_1951PDB nucleotide sequence format (SEQRES lines).pdbseqresnuchttp://edamontology.org/format_1952PDB sequence format (SEQRES lines).pdbseqreshttp://edamontology.org/format_1953Raw sequence format with no non-sequence characters.rawhttp://edamontology.org/format_1957Refseq protein entry sequence format.refseqphttp://edamontology.org/format_1958Staden suite sequence format.Staden formathttp://edamontology.org/format_1960Stockholm multiple sequence alignment format (used by Pfam and Rfam).Stockholm formathttp://edamontology.org/format_1961DNA strider output sequence format.strider formathttp://edamontology.org/format_1962Plain text sequence format (essentially unformatted).plain text format (unformatted)http://edamontology.org/format_1964NCBI ASN.1-based sequence format.ASN.1 sequence formathttp://edamontology.org/format_1966EMBOSS debugging trace sequence format of full internal data content.debug-seqhttp://edamontology.org/format_1969Jackknifer output sequence non-interleaved format.jackknifernonhttp://edamontology.org/format_1970Nexus/paup non-interleaved sequence format.nexusnonhttp://edamontology.org/format_1973EMBOSS debugging trace feature format of full internal data content.debug-feathttp://edamontology.org/format_1979ClustalW format for (aligned) sequences.ClustalW formatclustalhttp://edamontology.org/format_1982EMBOSS alignment format for debugging trace of full internal data content.debughttp://edamontology.org/format_1983Alignment format for start and end of matches between sequence pairs.matchhttp://edamontology.org/format_1990Alignment format for score values for pairs of sequences.scores formathttp://edamontology.org/format_1999SELEX format for (aligned) sequences.selexhttp://edamontology.org/format_2000EMBOSS simple multiple alignment format.EMBOSS simple formathttp://edamontology.org/format_2001Simple multiple sequence (alignment) format for SRS.srs formathttp://edamontology.org/format_2002Simple sequence pair (alignment) format for SRS.srspairhttp://edamontology.org/format_2003T-Coffee program alignment format.T-Coffee formathttp://edamontology.org/format_2004Treecon format for (aligned) sequences.TreeCon-seqhttp://edamontology.org/format_2005Alphabet for molecular sequence with possible unknown positions but without non-sequence characters.purehttp://edamontology.org/format_2094Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous purehttp://edamontology.org/format_1206Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.pure nucleotidehttp://edamontology.org/format_1210Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.pure proteinhttp://edamontology.org/format_1219Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous purehttp://edamontology.org/format_2567Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_2607Alphabet for a molecular sequence with possible unknown positions but possibly with non-sequence characters.unpurehttp://edamontology.org/format_2095Alphabet for the consensus of two or more molecular sequences.consensushttp://edamontology.org/format_1209Alphabet for a molecular sequence with possible unknown positions but without ambiguity characters.unambiguous sequencehttp://edamontology.org/format_2096Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous purehttp://edamontology.org/format_1206Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for a molecular sequence with possible unknown positions and possible ambiguity characters.ambiguoushttp://edamontology.org/format_2097Alphabet for the consensus of two or more molecular sequences.consensushttp://edamontology.org/format_1209A text format resembling EMBL entry format.EMBL-like (text)http://edamontology.org/format_2181EMBL entry format.EMBL formatEMBL sequence formatEMBLhttp://edamontology.org/format_1927Geneseq sequence format.geneseqhttp://edamontology.org/format_2186A text format resembling FASTQ short read format.FASTQ-like format (text)http://edamontology.org/format_2182FASTQ short read format ignoring quality scores.FASTQFASTAQfqhttp://edamontology.org/format_1930FASTQ Illumina 1.3 short read format.FASTQ-illuminahttp://edamontology.org/format_1931FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ short read format with phred quality.FASTQ-sangerhttp://edamontology.org/format_1932FASTQ Solexa/Illumina 1.0 short read format.FASTQ-solexahttp://edamontology.org/format_1933FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences).qualhttp://edamontology.org/format_3607FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.qualsolidhttp://edamontology.org/format_3610FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.qual454http://edamontology.org/format_3611A text sequence format resembling uniprotkb entry format.UniProt-like (text)http://edamontology.org/format_2187UniProtKB entry sequence format.UniProtKB formatUniProt formatSwissProt formathttp://edamontology.org/format_1963Abstract format used by MedLine database.medlinehttp://edamontology.org/format_2194A text format resembling FASTA format.FASTA-like (text)http://edamontology.org/format_2200FASTA-style format for multiple sequences aligned by HMMER package to an HMM.HMMER-alnhttp://edamontology.org/format_1391Fasta format variant with database name before ID.dbidhttp://edamontology.org/format_1926FASTA format including NCBI-style IDs.FASTAFASTA formatFASTA sequence formathttp://edamontology.org/format_1929FASTA sequence format including NCBI-style GIs.giFASTA formathttp://edamontology.org/format_1940Plain old FASTA sequence format (unspecified format for IDs).Pearson formathttp://edamontology.org/format_1954NCBI FASTA sequence format with NCBI-style IDs.NCBI formathttp://edamontology.org/format_1972Fasta format for (aligned) sequences.FASTA-alnhttp://edamontology.org/format_1984The A2M format is used as the primary format for multiple alignments of protein or nucleic-acid sequences in the SAM suite of tools. It is a small modification of FASTA format for sequences and is compatible with most tools that read FASTA.A2Mhttp://edamontology.org/format_3281Color space FASTA format sequence variant.csfastahttp://edamontology.org/format_3589A text format resembling GenBank entry (plain text) format.GenBank-like format (text)http://edamontology.org/format_2205Genbank entry format.GenBank formatGenBankhttp://edamontology.org/format_1936Genpept protein entry format.genpepthttp://edamontology.org/format_1937GFF feature format (of indeterminate version).GFFhttp://edamontology.org/format_2305General Feature Format (GFF) of sequence features.GFF2http://edamontology.org/format_1974GFF feature file format with sequence in the header.GFF2-seqhttp://edamontology.org/format_1938Generic Feature Format version 3 (GFF3) of sequence features.GFF3http://edamontology.org/format_1975GFF3 feature file format with sequence.GFF3-seqhttp://edamontology.org/format_1939Genome Variation Format (GVF). A GFF3-compatible format with defined header and attribute tags for sequence variation.GVFhttp://edamontology.org/format_3019Gene Transfer Format (GTF), a restricted version of GFF.GTFhttp://edamontology.org/format_2306OBO ontology text format.OBOhttp://edamontology.org/format_2549Alphabet for a molecular sequence without any unknown positions or ambiguity characters.completely unambiguoushttp://edamontology.org/format_2566Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous purehttp://edamontology.org/format_2567Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_2607Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.SAMhttp://edamontology.org/format_2573Some variant of Pearson MARKX alignment format.markx0 varianthttp://edamontology.org/format_2922Pearson MARKX0 alignment format.markx0http://edamontology.org/format_1985Pearson MARKX1 alignment format.markx1http://edamontology.org/format_1986Pearson MARKX10 alignment format.markx10http://edamontology.org/format_1987Pearson MARKX2 alignment format.markx2http://edamontology.org/format_1988Pearson MARKX3 alignment format.markx3http://edamontology.org/format_1989Some variant of Mega format for (typically aligned) sequences.mega varianthttp://edamontology.org/format_2923Mega format for (typically aligned) sequences.megahttp://edamontology.org/format_1991Mega non-interleaved format for (typically aligned) sequences.meganonhttp://edamontology.org/format_1992Some variant of Phylip format for (aligned) sequences.Phylip format varianthttp://edamontology.org/format_2924Phylip format for (aligned) sequences.PHYLIP formatphyphPHYLIP interleaved formathttp://edamontology.org/format_1997Phylip non-interleaved format for (aligned) sequences.phylipnonPHYLIP sequential formathttp://edamontology.org/format_1998ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards).ACEhttp://edamontology.org/format_3001Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.BEDhttp://edamontology.org/format_3003Browser Extensible Data (BED) format of sequence annotation track that strictly does not contain non-standard fields beyond the first 3 columns. bedstricthttp://edamontology.org/format_3584BED file format where each feature is described by chromosome, start, end, name, score, and strand.bed6http://edamontology.org/format_3585Human ENCODE peak format.ENCODE peak formathttp://edamontology.org/format_3612Human ENCODE narrow peak format.ENCODE narrow peak formathttp://edamontology.org/format_3613Human ENCODE broad peak format.ENCODE broad peak formathttp://edamontology.org/format_3614A BED file where each feature is described by all twelve columns.bed12http://edamontology.org/format_3586Tabular format of chromosome names and sizes used by Galaxy.chrominfohttp://edamontology.org/format_3587Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.WIGhttp://edamontology.org/format_3005PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.PSLhttp://edamontology.org/format_3007Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.MAFhttp://edamontology.org/format_3008genePred table format for gene prediction tracks.genePredhttp://edamontology.org/format_3011Personal Genome SNP (pgSnp) format for sequence variation tracks (indels and polymorphisms), supported by the UCSC Genome Browser.pgSnphttp://edamontology.org/format_3012axt format of alignments, typically produced from BLASTZ.axthttp://edamontology.org/format_3013LAV format of alignments generated by BLASTZ and LASTZ.LAVhttp://edamontology.org/format_3014Pileup format of alignment of sequences (e.g. sequencing reads) to (a) reference sequence(s). Contains aligned bases per base of the reference sequence(s).Pileuphttp://edamontology.org/format_3015Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).VCFhttp://edamontology.org/format_3016MAGE-TAB textual format for microarray expression data, standardised by MGED (now FGED).MAGE-TABhttp://edamontology.org/format_3162GTrack is a generic and optimised tabular format for genome or sequence feature tracks. GTrack unifies the power of other track formats (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, customisation, and automation ("machine understandability").GTrackGTrack|BTrack|GSuite GTrackBioXSD|GTrack GTrackBioXSD/GTrack GTrackGTrack formatGTrack|GSuite|BTrack GTrackhttp://edamontology.org/format_3164Cytoband format for chromosome cytobands.Cytoband formathttp://edamontology.org/format_3235Tabular Molecular Interaction format (MITAB), standardised by HUPO PSI MI.PSI MI TAB (MITAB)http://edamontology.org/format_3242A human-readable encoding for the Web Ontology Language (OWL).OWL Functional Syntaxhttp://edamontology.org/format_3252A syntax for writing OWL class expressions.Manchester OWL Syntaxhttp://edamontology.org/format_3253A superset of the "Description-Logic Knowledge Representation System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort".KRSS2 Syntaxhttp://edamontology.org/format_3254The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.Turtlehttp://edamontology.org/format_3255A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.N-Tripleshttp://edamontology.org/format_3256A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.Notation3N3http://edamontology.org/format_3257The PED/MAP file describes data used by the Plink package.PED/MAPPlink PED/MAPhttp://edamontology.org/format_3288The MAP file describes SNPs and is used by the Plink package.MAPPlink MAPhttp://edamontology.org/format_3285The PED file describes individuals and genetic data and is used by the Plink package.PEDPlink PEDhttp://edamontology.org/format_3286File format of a CT (Connectivity Table) file from the RNAstructure package.CTConnect formatConnectivity Table file formathttp://edamontology.org/format_3309XRNA old input style format.SShttp://edamontology.org/format_3310Format for the Genetic Data Environment (GDE).GDEhttp://edamontology.org/format_3312Format of the cytoscape input file of gene expression ratios or values are specified over one or more experiments.Cytoscape input file formathttp://edamontology.org/format_3477Some format based on the GCG format.GCG format varianthttp://edamontology.org/format_3486GCG sequence file format.GCGGCG SSFhttp://edamontology.org/format_1935GCG MSF (multiple sequence file) file format.GCG MSFMSFhttp://edamontology.org/format_1947Rich sequence format.RSFGCG RSFhttp://edamontology.org/format_3485Ensembl standard format for variation data.Ensembl variation file formathttp://edamontology.org/format_3499Text-based tagged file format for medical images generated using the MetaImage software package.mhdMetalmage formathttp://edamontology.org/format_3550Nearly Raw Rasta Data format designed to support scientific visualisation and image processing involving N-dimensional raster data.nrrdhttp://edamontology.org/format_3551File format used for scripts written in the R programming language for execution within the R software environment, typically for statistical computation and graphics. R file formathttp://edamontology.org/format_3554File format used for scripts for the Statistical Package for the Social Sciences. SPSShttp://edamontology.org/format_3555Reporter Code Count-A data file (.csv) output by the Nanostring nCounter Digital Analyzer, which contains gene sample information, probe information and probe counts.rcchttp://edamontology.org/format_3580ARFF (Attribute-Relation File Format) is an ASCII text file format that describes a list of instances sharing a set of attributes.arffhttp://edamontology.org/format_3581AFG is a single text-based file assembly format that holds read and consensus information togetherafghttp://edamontology.org/format_3582The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome databedgraphhttp://edamontology.org/format_3583Tabular format of chromosome names and sizes used by Galaxy.chrominfohttp://edamontology.org/format_3587Custom Sequence annotation track format used by Galaxy.customtrackhttp://edamontology.org/format_3588Textual report format for sequence quality for reports from sequencing machines.Sequence quality report format (text)http://edamontology.org/format_3606FASTQ format subset for Phred sequencing quality score data only (no sequences).qualhttp://edamontology.org/format_3607FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.qualsolidhttp://edamontology.org/format_3610FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.qual454http://edamontology.org/format_3611mzTab is a tab-delimited format for mass spectrometry-based proteomics and metabolomics results.mzTabhttp://edamontology.org/format_3681The Investigation / Study / Assay (ISA) tab-delimited (TAB) format incorporates metadata from experiments employing a combination of technologies.ISA-TABISA-Tabhttp://edamontology.org/format_3687SBtab is a tabular format for biochemical network models.SBtabhttp://edamontology.org/format_3688Biological Expression Language (BEL) is a textual format for representing scientific findings in life sciences in a computable form.BELhttp://edamontology.org/format_3691AGP is a tabular format for a sequence assembly (a contig, a scaffold/supercontig, or a chromosome).AGPhttp://edamontology.org/format_3693PostScript formatPSPostScripthttp://edamontology.org/format_3696Encapsulated PostScript formatEPShttp://edamontology.org/format_3466Tab-delimited text files of GenePattern that contain a column for each sample, a row for each gene, and an expression value for each gene in each sample.GCT/Res formatRes formatGCT formathttp://edamontology.org/format_3709Output format used by X! series search engines that is based on the XML language BIOML.X!Tandem XMLhttp://edamontology.org/format_3711"Raw" result file from Mascot database search.Mascot .dat filehttp://edamontology.org/format_3713Format of peak list files from Andromeda search engine (MaxQuant) that consist of arbitrarily many spectra.MaxQuant APL peaklist formatMaxQuant APLhttp://edamontology.org/format_3714The LocARNA PP format combines sequence or alignment information and (respectively, single or consensus) ensemble probabilities into an PP 2.0 record.LocARNA PPhttp://edamontology.org/format_3728Input format used by the Database of Genotypes and Phenotypes (dbGaP).dbGaP formathttp://edamontology.org/format_3729The BIological Observation Matrix (BIOM) is a format for representing biological sample by observation contingency tables in broad areas of comparative omics. The primary use of this format is to represent OTU tables and metagenome tables.BIOM formatBIological Observation Matrix formathttp://edamontology.org/format_3746Tabular data represented as values in a text file delimited by some character.DSVDelimiter-separated valueshttp://edamontology.org/format_3751Tabular data represented as tab-separated values in a text file.TSVTab-separated valueshttp://edamontology.org/format_3475Tabular data represented as comma-separated values in a text file.CSVComma-separated valueshttp://edamontology.org/format_3752"Raw" result file from SEQUEST database search.SEQUEST .out filehttp://edamontology.org/format_3758GSuite is a tabular format for collections of genome or sequence feature tracks, suitable for integrative multi-track analysis. GSuite contains links to genome/sequence tracks, with additional metadata.GSuiteBioXSD|GTrack GSuiteGTrack|GSuite|BTrack GSuiteGSuite formatBioXSD/GTrack GSuiteGTrack|BTrack|GSuite GSuiteGSuite (GTrack ecosystem of formats)http://edamontology.org/format_3775The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD) is an international standard format for exchange of germplasm information.MCPDMCPD V.2MCPD V.1IPGRI MCPDBioversity MCPDMulti-Crop Passport Descriptors formatFAO MCPDMCPD formatMulti-Crop Passport Descriptorshttp://edamontology.org/format_3777Native textual export format of annotated scientific text from PubTator.PubTator formathttp://edamontology.org/format_3783A family of similar formats of text annotation, used by BRAT and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013), BRAT format, BRAT standoff format, and similar.BioNLP Shared Task formatBRAT formatBRAT standoff formathttp://edamontology.org/format_3785SQL (Structured Query Language) is the de-facto standard query language (format of queries) for querying and manipulating data in relational databases.SQLStructured Query Languagehttp://edamontology.org/format_3788XQuery (XML Query) is a query language (format of queries) for querying and manipulating structured and unstructured data, usually in the form of XML, text, and with vendor-specific extensions for other data formats (JSON, binary, etc.).XQueryXML Queryhttp://edamontology.org/format_3789SPARQL (SPARQL Protocol and RDF Query Language) is a semantic query language for querying and manipulating data stored in Resource Description Framework (RDF) format.SPARQLSPARQL Protocol and RDF Query Languagehttp://edamontology.org/format_3790HTML format.HTMLHypertext Markup Languagehttp://edamontology.org/format_2331The format of iHOP (Information Hyperlinked over Proteins) text-mining result.iHOP formathttp://edamontology.org/format_1740FASTA format wrapped in HTML elements.FASTA-HTMLhttp://edamontology.org/format_2310EMBL entry format wrapped in HTML elements.EMBL-HTMLhttp://edamontology.org/format_2311Genbank entry format wrapped in HTML elements.GenBank-HTMLhttp://edamontology.org/format_2532MIME HTML format for Web pages, which can include external resources, including images, Flash animations and so on. MHTMLMHTMIME HTMLHTML email message formatMHT formatMHTML formatMIME HTML formatHTML email formathttp://edamontology.org/format_3556eXtensible Markup Language (XML) format.XMLeXtensible Markup Languagehttp://edamontology.org/format_2332Entry format of PDB database in PDBML (XML) format.PDBMLhttp://edamontology.org/format_1478Format of Taverna workflows.Taverna workflow formathttp://edamontology.org/format_1665The format of iHOP (Information Hyperlinked over Proteins) text-mining result.iHOP formathttp://edamontology.org/format_1740OSCAR format of annotated chemical text.OSCAR formathttp://edamontology.org/format_1741DAS sequence (XML) format (any type).DAS formatdas sequence formathttp://edamontology.org/format_1967DAS sequence (XML) format (nucleotide-only).dasdnahttp://edamontology.org/format_1968DAS GFF (XML) feature format.DASGFFdas featureDASGFF featurehttp://edamontology.org/format_1978Entry format (XML) for the STRING database of protein interaction.STRING entry format (XML)http://edamontology.org/format_2304BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.BioXSD (XML)BioXSD in XMLBioXSD+XMLBioXSD XML formatBioXSD in XML formatBioXSD XMLhttp://edamontology.org/format_2352OBO ontology XML format.OBO-XMLhttp://edamontology.org/format_2550An XML format resembling EMBL entry format.EMBL-like (XML)http://edamontology.org/format_2558An XML format for EMBL entries.EMBL format (XML)http://edamontology.org/format_2204XML format for EMBL entries.EMBLXMLhttp://edamontology.org/format_2183XML format for EMBL entries.cdsxmlhttp://edamontology.org/format_2184XML format for EMBL entries.insdxmlhttp://edamontology.org/format_2185Systems Biology Markup Language (SBML), the standard XML format for models of biological processes such as for example metabolism, cell signaling, and gene regulation.SBMLhttp://edamontology.org/format_2585Systems Biology Result Markup Language (SBRML), the standard XML format for simulated or calculated results (e.g. trajectories) of systems biology models.SBRMLhttp://edamontology.org/format_3155EBI Application Result XML is a format returned by sequence similarity search Web services at EBI.EBI Application Result XMLhttp://edamontology.org/format_3157XML Molecular Interaction Format (MIF), standardised by HUPO PSI MI.PSI MI XML (MIF)MIFhttp://edamontology.org/format_3158Protein affinity format (PSI-PAR), standardised by HUPO PSI MI. It is compatible with PSI MI XML (MIF) and uses the same XML Schema.PSI-PARhttp://edamontology.org/format_3243phyloXML is a standardised XML format for phylogenetic trees, networks, and associated data.phyloXMLhttp://edamontology.org/format_3159NeXML is a standardised XML format for rich phyloinformatic data.NeXMLhttp://edamontology.org/format_3160MAGE-ML XML format for microarray expression data, standardised by MGED (now FGED).MAGE-MLhttp://edamontology.org/format_3161GCDML XML format for genome and metagenome metadata according to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic Standards Consortium (GSC).GCDMLhttp://edamontology.org/format_3163CopasiML, the native format of COPASI.CopasiMLhttp://edamontology.org/format_3239CellML, the format for mathematical models of biological and other networks.CellMLhttp://edamontology.org/format_3240mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.mzMLhttp://edamontology.org/format_3244TraML (Transition Markup Language) is the format for mass spectrometry transitions, standardised by HUPO PSI MSS.TraMLhttp://edamontology.org/format_3246mzIdentML is the exchange format for peptides and proteins identified from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of proteomics search engines.mzIdentMLhttp://edamontology.org/format_3247mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.mzQuantMLhttp://edamontology.org/format_3248GelML is the format for describing the process of gel electrophoresis, standardised by HUPO PSI PS.GelMLhttp://edamontology.org/format_3249spML is the format for describing proteomics sample processing, other than using gels, prior to mass spectrometric protein identification, standardised by HUPO PSI PS. It may also be applicable for metabolomics.spMLhttp://edamontology.org/format_3250Resource Description Framework (RDF) XML format.RDF/XMLhttp://edamontology.org/format_3261OWL ontology XML serialisation format.OWL/XMLOWLhttp://edamontology.org/format_3262RNA Markup Language.RNAMLhttp://edamontology.org/format_3311XML format as produced by the NCBI Blast packageBLAST XML results formathttp://edamontology.org/format_3331Microsoft Excel spreadsheet format.xlsMicrosoft Excel formathttp://edamontology.org/format_3468Bioinformatics Sequence Markup Language format.BSMLhttp://edamontology.org/format_3487Microsoft Word format.docxMicrosoft Word formatdochttp://edamontology.org/format_3506Scalable Vector Graphics (SVG) is an XML-based vector image format for two-dimensional graphics with support for interactivity and animation.SVGsvgScalable Vector Graphicshttp://edamontology.org/format_3604Open data format for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans, intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses.pepXMLhttp://edamontology.org/format_3655Graphical Pathway Markup Language (GPML) is an XML format used for exchanging biological pathways.GPMLhttp://edamontology.org/format_3657imzML is a data format for mass spectrometry imaging data. NB.: See comment.imzMLhttp://edamontology.org/format_3682qcML is an XML format for quality-related data of mass spectrometry and other high-throughput measurements.qcMLhttp://edamontology.org/format_3683PRIDE XML is an XML format for mass spectra, peptide and protein identifications, and metadata about a corresponding measurement, sample, experiment.PRIDE XMLhttp://edamontology.org/format_3684Simulation Experiment Description Markup Language (SED-ML) is an XML format for encoding simulation setups, according to the MIASE (Minimum Information About a Simulation Experiment) requirements.SED-MLhttp://edamontology.org/format_3685Biological Connection Markup Language (BCML) is an XML format for biological pathways.BCMLhttp://edamontology.org/format_3689Biological Dynamics Markup Language (BDML) is an XML format for quantitative data describing biological dynamics.BDMLhttp://edamontology.org/format_3690SBGN-ML is an XML format for Systems Biology Graphical Notation (SBGN) diagrams of biological pathways or networks.SBGN-MLhttp://edamontology.org/format_3692Synthetic Biology Open Language (SBOL) is an XML format for the specification and exchange of biological design information in synthetic biology.SBOLhttp://edamontology.org/format_3725PMML uses XML to represent mining models. The structure of the models is described by an XML Schema.PMMLhttp://edamontology.org/format_3726A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.protXMLhttp://edamontology.org/format_3747XML file format for files containing information about peptide identifications from mass spectrometry data analysis carried out with OpenMS.idXMLhttp://edamontology.org/format_3764UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.UniProtKB XMLUniProt XMLUniProt XML formatUniProtKB XML formathttp://edamontology.org/format_3770BioC is a standardised XML format for sharing and integrating text data and annotations.BioChttp://edamontology.org/format_3782XML format for XML Schema.xsdhttp://edamontology.org/format_3804Binary format.Binary formathttp://edamontology.org/format_2333A format of raw sequence read data from an Applied Biosystems sequencing machine.ABIhttp://edamontology.org/format_1628Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata.SCFhttp://edamontology.org/format_1632BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.BAMhttp://edamontology.org/format_2572AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence.AB1http://edamontology.org/format_3000bigBed format for large sequence annotation tracks, similar to textual BED format.bigBedhttp://edamontology.org/format_3004bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.bigWighttp://edamontology.org/format_30062bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.2bithttp://edamontology.org/format_3009.nib (nibble) binary format of a nucleotide sequence using 4 bits per nucleotide (including unknown) and its lower-case 'masking'..nibhttp://edamontology.org/format_3010Sequence Read Format (SRF) of sequence trace data. Supports submission to the NCBI Short Read Archive.SRFhttp://edamontology.org/format_3017ZTR format for storing chromatogram data from DNA sequencing instruments.ZTRhttp://edamontology.org/format_3018BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).BCFhttp://edamontology.org/format_3020Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing.SFFStandard flowgram formathttp://edamontology.org/format_3284Data index formathttp://edamontology.org/format_3326BAM indexing formatBAIhttp://edamontology.org/format_3327Bowtie format for indexed reference genome for "small" genomes.ebwtBowtie index formathttp://edamontology.org/format_3484Bowtie format for indexed reference genome for "large" genomes.ebwtlBowtie long index formathttp://edamontology.org/format_3491Index file format used by the samtools package to index TAB-delimited genome position files.Tabix index file formathttp://edamontology.org/format_3700Reference-based compression of alignment formatCRAMhttp://edamontology.org/format_3462Graphics Interchange Format.GIFhttp://edamontology.org/format_3467Portable Document FormatPDFhttp://edamontology.org/format_3508Medical image format corresponding to the Digital Imaging and Communications in Medicine (DICOM) standard. DICOM formathttp://edamontology.org/format_3548Medical image and metadata format of the Neuroimaging Informatics Technology Initiative. niiNIfTI-1 formathttp://edamontology.org/format_3549Proprietary file format for (raw) BeadArray data used by genomewide profiling platforms from Illumina Inc. This format is output directly from the scanner and stores summary intensities for each probe-type on an array.IDAThttp://edamontology.org/format_3578Joint Picture Group file format for lossy graphics file. JPGhttp://edamontology.org/format_3579HDF5 is a generic hierarchical data file format used to store and organize large amounts of data.hdf5h5http://edamontology.org/format_3590A versatile bitmap format.tiffhttp://edamontology.org/format_3591Standard bitmap storage format in the Microsoft Windows environment.bmphttp://edamontology.org/format_3592IM is a format used by LabEye and other applications based on the IFUNC image processing library.imhttp://edamontology.org/format_3593Photo CD format, which is the highest resolution format for images on a CD.pcdhttp://edamontology.org/format_3594PCX is an image file format that uses a simple form of run-length encoding. It is lossless. pcxhttp://edamontology.org/format_3595The PPM format is a lowest common denominator color image file format. ppmhttp://edamontology.org/format_3596PSD (Photoshop Document) is a proprietary file that allows the user to work with the images’ individual layers even after the file has been saved.psdhttp://edamontology.org/format_3597X BitMap is a plain text binary image format used by the X Window System used for storing cursor and icon bitmaps used in the X GUI. xbmhttp://edamontology.org/format_3598X PixMap (XPM) is an image file format used by the X Window System, it is intended primarily for creating icon pixmaps, and supports transparent pixels. xpmhttp://edamontology.org/format_3599RGB file format is the native raster graphics file format for Silicon Graphics workstations. rgbhttp://edamontology.org/format_3600The PBM format is a lowest common denominator monochrome file format. It serves as the common language of a large family of bitmap image conversion filters. pbmhttp://edamontology.org/format_3601The PGM format is a lowest common denominator grayscale file format. pgmhttp://edamontology.org/format_3602PNG is a file format for image compression. PNGpnghttp://edamontology.org/format_3603Sun Raster is a raster graphics file format used on SunOS by Sun Microsystemsrasthttp://edamontology.org/format_3605Blocked GNU Zip format.bgziphttp://edamontology.org/format_3615TAB-delimited genome position file index format.tabixhttp://edamontology.org/format_3616MS Excel spreadsheet format consisting of a set of XML documents stored in a ZIP-compressed file.xlsxhttp://edamontology.org/format_3620Data format used by the SQLite database.SQLite formathttp://edamontology.org/format_3621Data format used by the SQLite database conformant to the Gemini schema.Gemini SQLite formathttp://edamontology.org/format_3622Format of a data index of some type.Index formathttp://edamontology.org/format_3623An index of a genome database, indexed for use by the snpeff tool.snpeffdbhttp://edamontology.org/format_3624A list of k-mers and their occurences in a dataset. Can also be used as an implicit De Bruijn graph.K-mer countgraphhttp://edamontology.org/format_3665imzML is a data format for mass spectrometry imaging data. NB.: See comment.imzMLhttp://edamontology.org/format_3682Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating all information necessary for a modeling and simulation project in systems biology.COMBINE OMEXhttp://edamontology.org/format_3686 SRA archive format (SRA) is the archive format used for input to the NCBI Sequence Read Archive.SRA format SRA archive formatSRAhttp://edamontology.org/format_3698VDB ('vertical database') is the native format used for export from the NCBI Sequence Read Archive.VDB SRA native formathttp://edamontology.org/format_3699Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex).WIFF formatwiffhttp://edamontology.org/format_3710Output format used by X! series search engines that is based on the XML language BIOML.X!Tandem XMLhttp://edamontology.org/format_3711Proprietary file format for mass spectrometry data from Thermo Scientific.Thermo RAWhttp://edamontology.org/format_3712Image file format used by the Open Microscopy Environment (OME). OME-TIFFhttp://edamontology.org/format_3727BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.BTrackGTrack|GSuite|BTrack BTrackBioXSD/GTrack BTrackBTrack (GTrack ecosystem of formats)BTrack formatBioXSD|GTrack BTrackGTrack|BTrack|GSuite BTrackhttp://edamontology.org/format_3776A placeholder concept for visual navigation by dividing data formats by the content of the data that is represented.Format (by type of data)Format (typed)http://edamontology.org/format_2350Data format for a molecular sequence record.Sequence record formathttp://edamontology.org/format_1919Format for sequence trace data (i.e. including base call information).Sequence trace formathttp://edamontology.org/format_2057A format of raw sequence read data from an Applied Biosystems sequencing machine.ABIhttp://edamontology.org/format_1628Format of MIRA sequence trace information file.mirahttp://edamontology.org/format_1629Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata.SCFhttp://edamontology.org/format_1632PHD sequence trace format to store serialised chromatogram data (reads).PHDhttp://edamontology.org/format_1633A format resembling FASTQ short read format.FASTQ-like formathttp://edamontology.org/format_2545A text format resembling FASTQ short read format.FASTQ-like format (text)http://edamontology.org/format_2182FASTQ short read format ignoring quality scores.FASTQFASTAQfqhttp://edamontology.org/format_1930FASTQ Illumina 1.3 short read format.FASTQ-illuminahttp://edamontology.org/format_1931FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ short read format with phred quality.FASTQ-sangerhttp://edamontology.org/format_1932FASTQ Solexa/Illumina 1.0 short read format.FASTQ-solexahttp://edamontology.org/format_1933FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences).qualhttp://edamontology.org/format_3607FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.qualsolidhttp://edamontology.org/format_3610FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.qual454http://edamontology.org/format_3611BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.BAMhttp://edamontology.org/format_2572Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.SAMhttp://edamontology.org/format_2573AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence.AB1http://edamontology.org/format_3000Sequence Read Format (SRF) of sequence trace data. Supports submission to the NCBI Short Read Archive.SRFhttp://edamontology.org/format_3017ZTR format for storing chromatogram data from DNA sequencing instruments.ZTRhttp://edamontology.org/format_3018Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing.SFFStandard flowgram formathttp://edamontology.org/format_3284BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.BioXSD (XML)BioXSD in XMLBioXSD+XMLBioXSD XML formatBioXSD in XML formatBioXSD XMLhttp://edamontology.org/format_2352A format resembling EMBL entry (plain text) format.EMBL-like formathttp://edamontology.org/format_2543A text format resembling EMBL entry format.EMBL-like (text)http://edamontology.org/format_2181EMBL entry format.EMBL formatEMBL sequence formatEMBLhttp://edamontology.org/format_1927Geneseq sequence format.geneseqhttp://edamontology.org/format_2186EMBL entry format wrapped in HTML elements.EMBL-HTMLhttp://edamontology.org/format_2311An XML format resembling EMBL entry format.EMBL-like (XML)http://edamontology.org/format_2558An XML format for EMBL entries.EMBL format (XML)http://edamontology.org/format_2204XML format for EMBL entries.EMBLXMLhttp://edamontology.org/format_2183XML format for EMBL entries.cdsxmlhttp://edamontology.org/format_2184XML format for EMBL entries.insdxmlhttp://edamontology.org/format_2185A format resembling FASTA format.FASTA-likehttp://edamontology.org/format_2546A text format resembling FASTA format.FASTA-like (text)http://edamontology.org/format_2200FASTA-style format for multiple sequences aligned by HMMER package to an HMM.HMMER-alnhttp://edamontology.org/format_1391Fasta format variant with database name before ID.dbidhttp://edamontology.org/format_1926FASTA format including NCBI-style IDs.FASTAFASTA formatFASTA sequence formathttp://edamontology.org/format_1929FASTA sequence format including NCBI-style GIs.giFASTA formathttp://edamontology.org/format_1940Plain old FASTA sequence format (unspecified format for IDs).Pearson formathttp://edamontology.org/format_1954NCBI FASTA sequence format with NCBI-style IDs.NCBI formathttp://edamontology.org/format_1972Fasta format for (aligned) sequences.FASTA-alnhttp://edamontology.org/format_1984The A2M format is used as the primary format for multiple alignments of protein or nucleic-acid sequences in the SAM suite of tools. It is a small modification of FASTA format for sequences and is compatible with most tools that read FASTA.A2Mhttp://edamontology.org/format_3281Color space FASTA format sequence variant.csfastahttp://edamontology.org/format_3589FASTA format wrapped in HTML elements.FASTA-HTMLhttp://edamontology.org/format_2310A sequence format resembling uniprotkb entry format.uniprotkb-like formathttp://edamontology.org/format_2547A text sequence format resembling uniprotkb entry format.UniProt-like (text)http://edamontology.org/format_2187UniProtKB entry sequence format.UniProtKB formatUniProt formatSwissProt formathttp://edamontology.org/format_1963UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.UniProtKB XMLUniProt XMLUniProt XML formatUniProtKB XML formathttp://edamontology.org/format_3770UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).UniProtKB RDFUniProt RDF/XMLUniProt RDF/XML formatUniProtKB RDF/XMLUniProtKB RDF/XML formatUniProt RDF formatUniProtKB RDF formatUniProt RDFhttp://edamontology.org/format_3771Data format for a molecular sequence record.Sequence record format (text)http://edamontology.org/format_2551ACEDB sequence format.acedbhttp://edamontology.org/format_1923Codata entry format.codatahttp://edamontology.org/format_1925Staden experiment file format.Staden experiment formathttp://edamontology.org/format_1928Fitch program format.fitch programhttp://edamontology.org/format_1934GFF feature file format with sequence in the header.GFF2-seqhttp://edamontology.org/format_1938GFF3 feature file format with sequence.GFF3-seqhttp://edamontology.org/format_1939Hennig86 output sequence format.hennig86http://edamontology.org/format_1941Intelligenetics sequence format.ighttp://edamontology.org/format_1942Intelligenetics sequence format (strict version).igstricthttp://edamontology.org/format_1943Jackknifer interleaved and non-interleaved sequence format.jackkniferhttp://edamontology.org/format_1944Mase program sequence format.mase formathttp://edamontology.org/format_1945Mega interleaved and non-interleaved sequence format.mega-seqhttp://edamontology.org/format_1946Nexus/paup interleaved sequence format.nexus-seqhttp://edamontology.org/format_1949PDB sequence format (ATOM lines).pdbatomhttp://edamontology.org/format_1950PDB nucleotide sequence format (ATOM lines).pdbatomnuchttp://edamontology.org/format_1951PDB nucleotide sequence format (SEQRES lines).pdbseqresnuchttp://edamontology.org/format_1952PDB sequence format (SEQRES lines).pdbseqreshttp://edamontology.org/format_1953Refseq protein entry sequence format.refseqphttp://edamontology.org/format_1958Staden suite sequence format.Staden formathttp://edamontology.org/format_1960DNA strider output sequence format.strider formathttp://edamontology.org/format_1962NCBI ASN.1-based sequence format.ASN.1 sequence formathttp://edamontology.org/format_1966EMBOSS debugging trace sequence format of full internal data content.debug-seqhttp://edamontology.org/format_1969Jackknifer output sequence non-interleaved format.jackknifernonhttp://edamontology.org/format_1970Nexus/paup non-interleaved sequence format.nexusnonhttp://edamontology.org/format_1973SELEX format for (aligned) sequences.selexhttp://edamontology.org/format_2000Treecon format for (aligned) sequences.TreeCon-seqhttp://edamontology.org/format_2005Some variant of Mega format for (typically aligned) sequences.mega varianthttp://edamontology.org/format_2923Mega format for (typically aligned) sequences.megahttp://edamontology.org/format_1991Mega non-interleaved format for (typically aligned) sequences.meganonhttp://edamontology.org/format_1992Some variant of Phylip format for (aligned) sequences.Phylip format varianthttp://edamontology.org/format_2924Phylip format for (aligned) sequences.PHYLIP formatphyphPHYLIP interleaved formathttp://edamontology.org/format_1997Phylip non-interleaved format for (aligned) sequences.phylipnonPHYLIP sequential formathttp://edamontology.org/format_1998Format for the Genetic Data Environment (GDE).GDEhttp://edamontology.org/format_3312Some format based on the GCG format.GCG format varianthttp://edamontology.org/format_3486GCG sequence file format.GCGGCG SSFhttp://edamontology.org/format_1935GCG MSF (multiple sequence file) file format.GCG MSFMSFhttp://edamontology.org/format_1947Rich sequence format.RSFGCG RSFhttp://edamontology.org/format_3485Data format for a molecular sequence record.Sequence record format (XML)http://edamontology.org/format_2552DAS sequence (XML) format (any type).DAS formatdas sequence formathttp://edamontology.org/format_1967DAS sequence (XML) format (nucleotide-only).dasdnahttp://edamontology.org/format_1968Bioinformatics Sequence Markup Language format.BSMLhttp://edamontology.org/format_3487UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.UniProtKB XMLUniProt XMLUniProt XML formatUniProtKB XML formathttp://edamontology.org/format_3770A format resembling GenBank entry (plain text) format.GenBank-like formathttp://edamontology.org/format_2559A text format resembling GenBank entry (plain text) format.GenBank-like format (text)http://edamontology.org/format_2205Genbank entry format.GenBank formatGenBankhttp://edamontology.org/format_1936Genpept protein entry format.genpepthttp://edamontology.org/format_1937Genbank entry format wrapped in HTML elements.GenBank-HTMLhttp://edamontology.org/format_2532BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.BioYAMLBioXSD BioYAMLBioXSD in YAML formatBioYAML formatBioXSD YAML formatBioXSD/GTrack BioYAMLBioYAML (BioXSD data model)BioXSD+YAMLBioXSD BioYAML formatBioXSD YAMLBioXSD in YAMLBioXSD|GTrack BioYAMLBioXSD|BioJSON|BioYAML BioYAMLBioYAML format (BioXSD)BioYAML (BioXSD)http://edamontology.org/format_3773Data format for molecular sequence feature information.Sequence feature annotation formathttp://edamontology.org/format_1920EMBOSS debugging trace feature format of full internal data content.debug-feathttp://edamontology.org/format_1979BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.BioXSD (XML)BioXSD in XMLBioXSD+XMLBioXSD XML formatBioXSD in XML formatBioXSD XMLhttp://edamontology.org/format_2352Format for a sequence feature table.Sequence feature table formathttp://edamontology.org/format_2548Text format for a sequence feature table.Sequence feature table format (text)http://edamontology.org/format_2206EMBL entry format.EMBL formatEMBL sequence formatEMBLhttp://edamontology.org/format_1927Genbank entry format.GenBank formatGenBankhttp://edamontology.org/format_1936GFF feature format (of indeterminate version).GFFhttp://edamontology.org/format_2305General Feature Format (GFF) of sequence features.GFF2http://edamontology.org/format_1974GFF feature file format with sequence in the header.GFF2-seqhttp://edamontology.org/format_1938Generic Feature Format version 3 (GFF3) of sequence features.GFF3http://edamontology.org/format_1975GFF3 feature file format with sequence.GFF3-seqhttp://edamontology.org/format_1939Genome Variation Format (GVF). A GFF3-compatible format with defined header and attribute tags for sequence variation.GVFhttp://edamontology.org/format_3019Gene Transfer Format (GTF), a restricted version of GFF.GTFhttp://edamontology.org/format_2306GTrack is a generic and optimised tabular format for genome or sequence feature tracks. GTrack unifies the power of other track formats (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, customisation, and automation ("machine understandability").GTrackGTrack|BTrack|GSuite GTrackBioXSD|GTrack GTrackBioXSD/GTrack GTrackGTrack formatGTrack|GSuite|BTrack GTrackhttp://edamontology.org/format_3164A five-column, tab-delimited table of feature locations and qualifiers for importing annotation into an existing Sequin submission (an NCBI tool for submitting and updating GenBank entries). Sequin formathttp://edamontology.org/format_3701A sequence format resembling uniprotkb entry format.uniprotkb-like formathttp://edamontology.org/format_2547A text sequence format resembling uniprotkb entry format.UniProt-like (text)http://edamontology.org/format_2187UniProtKB entry sequence format.UniProtKB formatUniProt formatSwissProt formathttp://edamontology.org/format_1963UniProtKB XML sequence features format is an XML format available for downloading UniProt entries.UniProtKB XMLUniProt XMLUniProt XML formatUniProtKB XML formathttp://edamontology.org/format_3770UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).UniProtKB RDFUniProt RDF/XMLUniProt RDF/XML formatUniProtKB RDF/XMLUniProtKB RDF/XML formatUniProt RDF formatUniProtKB RDF formatUniProt RDFhttp://edamontology.org/format_3771XML format for a sequence feature table.Sequence feature table format (XML)http://edamontology.org/format_2553DAS GFF (XML) feature format.DASGFFdas featureDASGFF featurehttp://edamontology.org/format_1978BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.BTrackGTrack|GSuite|BTrack BTrackBioXSD/GTrack BTrackBTrack (GTrack ecosystem of formats)BTrack formatBioXSD|GTrack BTrackGTrack|BTrack|GSuite BTrackhttp://edamontology.org/format_3776Format of a sequence annotation track.Sequence annotation track formathttp://edamontology.org/format_2919Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser.BEDhttp://edamontology.org/format_3003Browser Extensible Data (BED) format of sequence annotation track that strictly does not contain non-standard fields beyond the first 3 columns. bedstricthttp://edamontology.org/format_3584BED file format where each feature is described by chromosome, start, end, name, score, and strand.bed6http://edamontology.org/format_3585Human ENCODE peak format.ENCODE peak formathttp://edamontology.org/format_3612Human ENCODE narrow peak format.ENCODE narrow peak formathttp://edamontology.org/format_3613Human ENCODE broad peak format.ENCODE broad peak formathttp://edamontology.org/format_3614A BED file where each feature is described by all twelve columns.bed12http://edamontology.org/format_3586Tabular format of chromosome names and sizes used by Galaxy.chrominfohttp://edamontology.org/format_3587bigBed format for large sequence annotation tracks, similar to textual BED format.bigBedhttp://edamontology.org/format_3004Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.WIGhttp://edamontology.org/format_3005bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.bigWighttp://edamontology.org/format_3006PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.PSLhttp://edamontology.org/format_3007Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.MAFhttp://edamontology.org/format_3008genePred table format for gene prediction tracks.genePredhttp://edamontology.org/format_3011Personal Genome SNP (pgSnp) format for sequence variation tracks (indels and polymorphisms), supported by the UCSC Genome Browser.pgSnphttp://edamontology.org/format_3012GTrack is a generic and optimised tabular format for genome or sequence feature tracks. GTrack unifies the power of other track formats (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, customisation, and automation ("machine understandability").GTrackGTrack|BTrack|GSuite GTrackBioXSD|GTrack GTrackBioXSD/GTrack GTrackGTrack formatGTrack|GSuite|BTrack GTrackhttp://edamontology.org/format_3164The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome databedgraphhttp://edamontology.org/format_3583Custom Sequence annotation track format used by Galaxy.customtrackhttp://edamontology.org/format_3588BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.BTrackGTrack|GSuite|BTrack BTrackBioXSD/GTrack BTrackBTrack (GTrack ecosystem of formats)BTrack formatBioXSD|GTrack BTrackGTrack|BTrack|GSuite BTrackhttp://edamontology.org/format_3776BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.BioYAMLBioXSD BioYAMLBioXSD in YAML formatBioYAML formatBioXSD YAML formatBioXSD/GTrack BioYAMLBioYAML (BioXSD data model)BioXSD+YAMLBioXSD BioYAML formatBioXSD YAMLBioXSD in YAMLBioXSD|GTrack BioYAMLBioXSD|BioJSON|BioYAML BioYAMLBioYAML format (BioXSD)BioYAML (BioXSD)http://edamontology.org/format_3773BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.BioJSON (Jalview)JSON (Jalview)JSON format (Jalview)BioJSON format (Jalview)Jalview BioJSONJalview JSONJalview BioJSON formatJalview JSON formathttp://edamontology.org/format_3774GSuite is a tabular format for collections of genome or sequence feature tracks, suitable for integrative multi-track analysis. GSuite contains links to genome/sequence tracks, with additional metadata.GSuiteBioXSD|GTrack GSuiteGTrack|GSuite|BTrack GSuiteGSuite formatBioXSD/GTrack GSuiteGTrack|BTrack|GSuite GSuiteGSuite (GTrack ecosystem of formats)http://edamontology.org/format_3775BTrack is an HDF5-based binary format for genome or sequence feature tracks and their collections, suitable for integrative multi-track analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite formats.BTrackGTrack|GSuite|BTrack BTrackBioXSD/GTrack BTrackBTrack (GTrack ecosystem of formats)BTrack formatBioXSD|GTrack BTrackGTrack|BTrack|GSuite BTrackhttp://edamontology.org/format_3776Data format for molecular sequence alignment information.Alignment formathttp://edamontology.org/format_1921Text format for molecular sequence alignment information.Alignment format (text)http://edamontology.org/format_2554FASTA-style format for multiple sequences aligned by HMMER package to an HMM.HMMER-alnhttp://edamontology.org/format_1391Format of multiple sequences aligned by DIALIGN package.DIALIGN formathttp://edamontology.org/format_1392EMBASSY 'domain alignment file' (DAF) format, containing a sequence alignment of protein domains belonging to the same SCOP or CATH family.dafhttp://edamontology.org/format_1393FASTA format including NCBI-style IDs.FASTAFASTA formatFASTA sequence formathttp://edamontology.org/format_1929Nexus/paup interleaved sequence format.nexus-seqhttp://edamontology.org/format_1949Stockholm multiple sequence alignment format (used by Pfam and Rfam).Stockholm formathttp://edamontology.org/format_1961Nexus/paup non-interleaved sequence format.nexusnonhttp://edamontology.org/format_1973ClustalW format for (aligned) sequences.ClustalW formatclustalhttp://edamontology.org/format_1982EMBOSS alignment format for debugging trace of full internal data content.debughttp://edamontology.org/format_1983Fasta format for (aligned) sequences.FASTA-alnhttp://edamontology.org/format_1984Alignment format for start and end of matches between sequence pairs.matchhttp://edamontology.org/format_1990EMBOSS simple sequence pair alignment format.pairhttp://edamontology.org/format_1996Alignment format for score values for pairs of sequences.scores formathttp://edamontology.org/format_1999SELEX format for (aligned) sequences.selexhttp://edamontology.org/format_2000EMBOSS simple multiple alignment format.EMBOSS simple formathttp://edamontology.org/format_2001Simple multiple sequence (alignment) format for SRS.srs formathttp://edamontology.org/format_2002T-Coffee program alignment format.T-Coffee formathttp://edamontology.org/format_2004Treecon format for (aligned) sequences.TreeCon-seqhttp://edamontology.org/format_2005Some variant of Pearson MARKX alignment format.markx0 varianthttp://edamontology.org/format_2922Pearson MARKX0 alignment format.markx0http://edamontology.org/format_1985Pearson MARKX1 alignment format.markx1http://edamontology.org/format_1986Pearson MARKX10 alignment format.markx10http://edamontology.org/format_1987Pearson MARKX2 alignment format.markx2http://edamontology.org/format_1988Pearson MARKX3 alignment format.markx3http://edamontology.org/format_1989Some variant of Mega format for (typically aligned) sequences.mega varianthttp://edamontology.org/format_2923Mega format for (typically aligned) sequences.megahttp://edamontology.org/format_1991Mega non-interleaved format for (typically aligned) sequences.meganonhttp://edamontology.org/format_1992Some variant of Phylip format for (aligned) sequences.Phylip format varianthttp://edamontology.org/format_2924Phylip format for (aligned) sequences.PHYLIP formatphyphPHYLIP interleaved formathttp://edamontology.org/format_1997Phylip non-interleaved format for (aligned) sequences.phylipnonPHYLIP sequential formathttp://edamontology.org/format_1998Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.MAFhttp://edamontology.org/format_3008The A2M format is used as the primary format for multiple alignments of protein or nucleic-acid sequences in the SAM suite of tools. It is a small modification of FASTA format for sequences and is compatible with most tools that read FASTA.A2Mhttp://edamontology.org/format_3281A multiple alignment in vertical format, as used in the AMPS (Alignment of Multiple Protein Sequences) pacakge.BLCBlock file formathttp://edamontology.org/format_3313EMBOSS simple sequence pair alignment format.POhttp://edamontology.org/format_3330Some format based on the GCG format.GCG format varianthttp://edamontology.org/format_3486GCG sequence file format.GCGGCG SSFhttp://edamontology.org/format_1935GCG MSF (multiple sequence file) file format.GCG MSFMSFhttp://edamontology.org/format_1947Rich sequence format.RSFGCG RSFhttp://edamontology.org/format_3485Color space FASTA format sequence variant.csfastahttp://edamontology.org/format_3589XML format for molecular sequence alignment information.Alignment format (XML)http://edamontology.org/format_2555BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.BioXSD (XML)BioXSD in XMLBioXSD+XMLBioXSD XML formatBioXSD in XML formatBioXSD XMLhttp://edamontology.org/format_2352Data format for molecular sequence alignment information that can hold sequence alignment(s) of only 2 sequences.Alignment format (pair only)http://edamontology.org/format_2920Simple sequence pair (alignment) format for SRS.srspairhttp://edamontology.org/format_2003BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.BAMhttp://edamontology.org/format_2572Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.SAMhttp://edamontology.org/format_2573PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.PSLhttp://edamontology.org/format_3007axt format of alignments, typically produced from BLASTZ.axthttp://edamontology.org/format_3013LAV format of alignments generated by BLASTZ and LASTZ.LAVhttp://edamontology.org/format_3014Pileup format of alignment of sequences (e.g. sequencing reads) to (a) reference sequence(s). Contains aligned bases per base of the reference sequence(s).Pileuphttp://edamontology.org/format_3015EBI Application Result XML is a format returned by sequence similarity search Web services at EBI.EBI Application Result XMLhttp://edamontology.org/format_3157Reference-based compression of alignment formatCRAMhttp://edamontology.org/format_3462RNA Markup Language.RNAMLhttp://edamontology.org/format_3311BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.BioYAMLBioXSD BioYAMLBioXSD in YAML formatBioYAML formatBioXSD YAML formatBioXSD/GTrack BioYAMLBioYAML (BioXSD data model)BioXSD+YAMLBioXSD BioYAML formatBioXSD YAMLBioXSD in YAMLBioXSD|GTrack BioYAMLBioXSD|BioJSON|BioYAML BioYAMLBioYAML format (BioXSD)BioYAML (BioXSD)http://edamontology.org/format_3773BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.BioJSON (Jalview)JSON (Jalview)JSON format (Jalview)BioJSON format (Jalview)Jalview BioJSONJalview JSONJalview BioJSON formatJalview JSON formathttp://edamontology.org/format_3774Data format for a phylogenetic tree.Phylogenetic tree formathttp://edamontology.org/format_2006Text format for a phylogenetic tree.Phylogenetic tree format (text)http://edamontology.org/format_2556Dendrogram (tree file) format generated by ClustalW.ClustalW dendrogramhttp://edamontology.org/format_1424Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted.Phylip tree rawhttp://edamontology.org/format_1425Phylogenetic tree data format used by the PHYLIP program.Phylip tree formathttp://edamontology.org/format_1435The format of an entry from the TreeBASE database of phylogenetic data.TreeBASE formathttp://edamontology.org/format_1436The format of an entry from the TreeFam database of phylogenetic data.TreeFam formathttp://edamontology.org/format_1437Phylogenetic tree Newick (text) format.newicknhhttp://edamontology.org/format_1910Phylogenetic tree TreeCon (text) format.TreeCon formathttp://edamontology.org/format_1911Phylogenetic tree Nexus (text) format.Nexus formathttp://edamontology.org/format_1912XML format for a phylogenetic tree.Phylogenetic tree format (XML)http://edamontology.org/format_2557phyloXML is a standardised XML format for phylogenetic trees, networks, and associated data.phyloXMLhttp://edamontology.org/format_3159NeXML is a standardised XML format for rich phyloinformatic data.NeXMLhttp://edamontology.org/format_3160Data format for a biological pathway or network.Biological pathway or network formathttp://edamontology.org/format_2013Systems Biology Markup Language (SBML), the standard XML format for models of biological processes such as for example metabolism, cell signaling, and gene regulation.SBMLhttp://edamontology.org/format_2585BioPAX is an exchange format for pathway data, with its data model defined in OWL.BioPAXhttp://edamontology.org/format_3156CopasiML, the native format of COPASI.CopasiMLhttp://edamontology.org/format_3239CellML, the format for mathematical models of biological and other networks.CellMLhttp://edamontology.org/format_3240SIF (simple interaction file) Format - a network/pathway format used for instance in cytoscape.sifhttp://edamontology.org/format_3619Graphical Pathway Markup Language (GPML) is an XML format used for exchanging biological pathways.GPMLhttp://edamontology.org/format_3657Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating all information necessary for a modeling and simulation project in systems biology.COMBINE OMEXhttp://edamontology.org/format_3686SBtab is a tabular format for biochemical network models.SBtabhttp://edamontology.org/format_3688Biological Connection Markup Language (BCML) is an XML format for biological pathways.BCMLhttp://edamontology.org/format_3689SBGN-ML is an XML format for Systems Biology Graphical Notation (SBGN) diagrams of biological pathways or networks.SBGN-MLhttp://edamontology.org/format_3692Data format for a sequence-profile alignment.Sequence-profile alignment formathttp://edamontology.org/format_2014Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package.Sequence-MEME profile alignmenthttp://edamontology.org/format_1419Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database.HMMER profile alignment (sequences versus HMMs)http://edamontology.org/format_1421Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database.HMMER profile alignment (HMM versus sequences)http://edamontology.org/format_1422Data format for a full-text scientific article.Article formatLiterature formathttp://edamontology.org/format_2020Article format of the PubMed Central database.pmchttp://edamontology.org/format_1739Abstract format used by MedLine database.medlinehttp://edamontology.org/format_2194Data format of a report from text mining.Text mining report formathttp://edamontology.org/format_2021The format of iHOP (Information Hyperlinked over Proteins) text-mining result.iHOP formathttp://edamontology.org/format_1740Data format for reports on enzyme kinetics.Enzyme kinetics report formathttp://edamontology.org/format_2027A report format for the kinetics of enzyme-catalysed reaction(s) in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax).findkmhttp://edamontology.org/format_1582Format of a report on a chemical compound.Small molecule report formatChemical compound annotation formathttp://edamontology.org/format_2030The format of an entry from the HET group dictionary (HET groups from PDB files).HET group dictionary entry formathttp://edamontology.org/format_1705Format of a report on a particular locus, gene, gene system or groups of genes.Gene annotation formatGene features formathttp://edamontology.org/format_2031Format of a report on exon-intron structure generated by EMBOSS est2genome.est2genome formathttp://edamontology.org/format_1316Format of a workflow.Workflow formathttp://edamontology.org/format_2032Format of Taverna workflows.Taverna workflow formathttp://edamontology.org/format_1665Data table formatted such that it can be passed/streamed within the KNIME platform.KNIME datatable formathttp://edamontology.org/format_3765Data format for a molecular tertiary structure.Tertiary structure formathttp://edamontology.org/format_2033Format of an entry (or part of an entry) from the PDB database.PDB database entry formatPDB entry formathttp://edamontology.org/format_1475Entry format of PDB database in PDB format.PDBPDB formathttp://edamontology.org/format_1476Entry format of PDB database in mmCIF format.mmCIFmmcifhttp://edamontology.org/format_1477Entry format of PDB database in PDBML (XML) format.PDBMLhttp://edamontology.org/format_1478PDB sequence format (ATOM lines).pdbatomhttp://edamontology.org/format_1950PDB nucleotide sequence format (ATOM lines).pdbatomnuchttp://edamontology.org/format_1951PDB nucleotide sequence format (SEQRES lines).pdbseqresnuchttp://edamontology.org/format_1952PDB sequence format (SEQRES lines).pdbseqreshttp://edamontology.org/format_1953Text format of a chemical formula.Chemical formula formathttp://edamontology.org/format_2035Chemical structure specified in Simplified Molecular Input Line Entry System (SMILES) line notation.SMILEShttp://edamontology.org/format_1196SMILES ARbitrary Target Specification (SMARTS) format for chemical structure specification, which is a subset of the SMILES line notation.smartshttp://edamontology.org/format_1200Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation.InChIhttp://edamontology.org/format_1197Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound.mfhttp://edamontology.org/format_1198The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound.InChIKeyhttp://edamontology.org/format_1199Format of raw (unplotted) phylogenetic data.Phylogenetic character data formathttp://edamontology.org/format_2036Format of phylogenetic continuous quantitative character data.Phylogenetic continuous quantitative character formathttp://edamontology.org/format_2037PHYLIP file format for continuous quantitative character data.Phylip continuous quantitative charactershttp://edamontology.org/format_1430PHYLIP file format for phylogenetics character frequency data.Phylip character frequencies formathttp://edamontology.org/format_1432Format of phylogenetic discrete states data.Phylogenetic discrete states formathttp://edamontology.org/format_2038Format of PHYLIP discrete states data.Phylip discrete states formathttp://edamontology.org/format_1433Format of phylogenetic cliques data.Phylogenetic tree report (cliques) formathttp://edamontology.org/format_2039Format of PHYLIP cliques data.Phylip cliques formathttp://edamontology.org/format_1434Format of phylogenetic invariants data.Phylogenetic tree report (invariants) formathttp://edamontology.org/format_2040Format for phylogenetic tree distance data.Phylogenetic tree report (tree distances) formathttp://edamontology.org/format_2049Format for distances, such as Branch Score distance, between two or more phylogenetic trees as used by the Phylip package.Phylip tree distance formathttp://edamontology.org/format_1445Format for reports on a protein family.Protein family report formathttp://edamontology.org/format_2052Format for molecular interaction data.Protein interaction formathttp://edamontology.org/format_2054Entry format (XML) for the STRING database of protein interaction.STRING entry format (XML)http://edamontology.org/format_2304XML Molecular Interaction Format (MIF), standardised by HUPO PSI MI.PSI MI XML (MIF)MIFhttp://edamontology.org/format_3158Protein affinity format (PSI-PAR), standardised by HUPO PSI MI. It is compatible with PSI MI XML (MIF) and uses the same XML Schema.PSI-PARhttp://edamontology.org/format_3243Tabular Molecular Interaction format (MITAB), standardised by HUPO PSI MI.PSI MI TAB (MITAB)http://edamontology.org/format_3242Format for sequence assembly data.Sequence assembly formathttp://edamontology.org/format_2055Text format for sequence assembly data.Sequence assembly format (text)http://edamontology.org/format_2561Common Assembly Format (CAF). A sequence assembly format including contigs, base-call qualities, and other metadata.CAFhttp://edamontology.org/format_1630Sequence assembly project file EXP format.exphttp://edamontology.org/format_1631AFG is a single text-based file assembly format that holds read and consensus information togetherafghttp://edamontology.org/format_3582ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards).ACEhttp://edamontology.org/format_3001AGP is a tabular format for a sequence assembly (a contig, a scaffold/supercontig, or a chromosome).AGPhttp://edamontology.org/format_3693Format of a file of gene expression data, e.g. a gene expression matrix or profile.Gene expression report formatGene expression data formathttp://edamontology.org/format_2058Format of Affymetrix data file of raw image data.datAffymetrix image data file formathttp://edamontology.org/format_1637Format of Affymetrix data file of information about (raw) expression levels of the individual probes.celAffymetrix probe raw data formathttp://edamontology.org/format_1638Format of Affymetrix data file of information about (normalised) expression levels of the individual probes.CHPAffymetrix probe normalised data formathttp://edamontology.org/format_1644MAGE-ML XML format for microarray expression data, standardised by MGED (now FGED).MAGE-MLhttp://edamontology.org/format_3161MAGE-TAB textual format for microarray expression data, standardised by MGED (now FGED).MAGE-TABhttp://edamontology.org/format_3162Format of the cytoscape input file of gene expression ratios or values are specified over one or more experiments.Cytoscape input file formathttp://edamontology.org/format_3477Proprietary file format for (raw) BeadArray data used by genomewide profiling platforms from Illumina Inc. This format is output directly from the scanner and stores summary intensities for each probe-type on an array.IDAThttp://edamontology.org/format_3578Reporter Code Count-A data file (.csv) output by the Nanostring nCounter Digital Analyzer, which contains gene sample information, probe information and probe counts.rcchttp://edamontology.org/format_3580The Investigation / Study / Assay (ISA) tab-delimited (TAB) format incorporates metadata from experiments employing a combination of technologies.ISA-TABISA-Tabhttp://edamontology.org/format_3687Tab-delimited text files of GenePattern that contain a column for each sample, a row for each gene, and an expression value for each gene in each sample.GCT/Res formatRes formatGCT formathttp://edamontology.org/format_3709Format of a map of (typically one) molecular sequence annotated with features.Map formathttp://edamontology.org/format_2060Map of a plasmid (circular DNA) in PlasMapper TextMap format.PlasMapper TextMaphttp://edamontology.org/format_1861Format of a report on PCR primers or hybridisation oligos in a nucleic acid sequence.Nucleic acid features (primers) formathttp://edamontology.org/format_2061Report format on PCR primers and hybridisation oligos as generated by Whitehead primer3 program.Primer3 primerhttp://edamontology.org/format_1627Format of a report of general information about a specific protein.Protein report formathttp://edamontology.org/format_2062Format of a report on the quality of a protein three-dimensional model.Protein structure report (quality evaluation) formathttp://edamontology.org/format_2065Format of output of the Pcons Model Quality Assessment Program (MQAP).Pcons report formathttp://edamontology.org/format_1551Format of output of the ProQ protein model quality predictor.ProQ report formathttp://edamontology.org/format_1552Format of a report on sequence hits and associated data from searching a sequence database.Database hits (sequence) formathttp://edamontology.org/format_2066Format of results of a sequence database search using FASTA.FASTA search results formathttp://edamontology.org/format_1332Format of results of a sequence database search using some variant of BLAST.BLAST resultshttp://edamontology.org/format_1333XML format as produced by the NCBI Blast packageBLAST XML results formathttp://edamontology.org/format_3331Format of results of a sequence database search using some variant of MSPCrunch.mspcrunchhttp://edamontology.org/format_1334Format of results of a sequence database search using some variant of Smith Waterman.Smith-Waterman formathttp://edamontology.org/format_1335Format of EMBASSY domain hits file (DHF) of hits (sequences) with domain classification information.dhfhttp://edamontology.org/format_1336Format of EMBASSY ligand hits file (LHF) of database hits (sequences) with ligand classification information.lhfhttp://edamontology.org/format_1337Results format for searches of the InterPro database.InterPro hits formathttp://edamontology.org/format_1341Format of results of a search of the InterPro database showing matches of query protein sequence(s) to InterPro entries.InterPro protein view report formathttp://edamontology.org/format_1342Format of results of a search of the InterPro database showing matches between protein sequence(s) and signatures for an InterPro entry.InterPro match table formathttp://edamontology.org/format_1343EBI Application Result XML is a format returned by sequence similarity search Web services at EBI.EBI Application Result XMLhttp://edamontology.org/format_3157Format of a matrix of genetic distances between molecular sequences.Sequence distance matrix formathttp://edamontology.org/format_2067Format of PHYLIP phylogenetic distance matrix data.Phylip distance matrixhttp://edamontology.org/format_1423Format of a sequence motif.Sequence motif formathttp://edamontology.org/format_2068Format of a regular expression pattern from the Prosite database.prosite-patternhttp://edamontology.org/format_1356Format of an EMBOSS sequence pattern.EMBOSS sequence patternhttp://edamontology.org/format_1357A motif in the format generated by the MEME program.meme-motifhttp://edamontology.org/format_1360Format of a sequence profile.Sequence profile formathttp://edamontology.org/format_2069Sequence profile (sequence classifier) format used in the PROSITE database.prosite-profilehttp://edamontology.org/format_1366A profile (sequence classifier) in the format used in the JASPAR database.JASPAR formathttp://edamontology.org/format_1367Format of a hidden Markov model.Hidden Markov model formathttp://edamontology.org/format_2072Format of the model of random sequences used by MEME.MEME background Markov modelhttp://edamontology.org/format_1369Format of a hidden Markov model representation used by the HMMER package.HMMER formathttp://edamontology.org/format_1370HMMER profile HMM file for HMMER versions 2.xHMMER2http://edamontology.org/format_3328HMMER profile HMM file for HMMER versions 3.xHMMER3http://edamontology.org/format_3329Data format of a dirichlet distribution.Dirichlet distribution formathttp://edamontology.org/format_2074Dirichlet distribution HMMER format.HMMER Dirichlet priorhttp://edamontology.org/format_1349Dirichlet distribution MEME format.MEME Dirichlet priorhttp://edamontology.org/format_1350Data format for the emission and transition counts of a hidden Markov model.HMM emission and transition counts formathttp://edamontology.org/format_2075Format of a report from the HMMER package on the emission and transition counts of a hidden Markov model.HMMER emission and transitionhttp://edamontology.org/format_1351Format for secondary structure (predicted or real) of an RNA molecule.RNA secondary structure formathttp://edamontology.org/format_2076Format of RNA secondary structure in dot-bracket notation, originally generated by the Vienna RNA package/server.Dot-bracket formatVienna RNA secondary structure formatVienna RNA formathttp://edamontology.org/format_1457Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server.Vienna local RNA secondary structure formathttp://edamontology.org/format_1458File format of a CT (Connectivity Table) file from the RNAstructure package.CTConnect formatConnectivity Table file formathttp://edamontology.org/format_3309XRNA old input style format.SShttp://edamontology.org/format_3310RNA Markup Language.RNAMLhttp://edamontology.org/format_3311Format for secondary structure (predicted or real) of a protein molecule.Protein secondary structure formathttp://edamontology.org/format_2077Format of an entry from the DSSP database (Dictionary of Secondary Structure in Proteins).dssphttp://edamontology.org/format_1454Entry format of the HSSP database (Homology-derived Secondary Structure in Proteins).hssphttp://edamontology.org/format_1455Format used to specify range(s) of sequence positions.Sequence range formathttp://edamontology.org/format_2078Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank database.EMBL feature locationFeature locationhttp://edamontology.org/format_1248Cytoband format for chromosome cytobands.Cytoband formathttp://edamontology.org/format_3235Format used for map of repeats in molecular (typically nucleotide) sequences.Sequence features (repeats) formathttp://edamontology.org/format_2155Report format for tandem repeats in a nucleotide sequence (format generated by the Sanger Centre quicktandem program).quicktandemhttp://edamontology.org/format_1295Report format for inverted repeats in a nucleotide sequence (format generated by the Sanger Centre inverted program).Sanger inverted repeatshttp://edamontology.org/format_1296Report format for tandem repeats in a sequence (an EMBOSS report format).EMBOSS repeathttp://edamontology.org/format_1297Format used for report on restriction enzyme recognition sites in nucleotide sequences.Nucleic acid features (restriction sites) formathttp://edamontology.org/format_2158Report format for restriction enzyme recognition sites used by EMBOSS restrict program.restrict formathttp://edamontology.org/format_1318Report format for restriction enzyme recognition sites used by EMBOSS restover program.restover formathttp://edamontology.org/format_1319Report format for restriction enzyme recognition sites used by REBASE database.REBASE restriction siteshttp://edamontology.org/format_1320Format used for clusters of molecular sequences.Sequence cluster formathttp://edamontology.org/format_2170Format used for clusters of protein sequences.Sequence cluster format (protein)http://edamontology.org/format_2171Format used for clusters of nucleotide sequences.Sequence cluster format (nucleic acid)http://edamontology.org/format_2172Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) from hierarchical clustering.affymetrixhttp://edamontology.org/format_1639Format used for ontologies.Ontology formathttp://edamontology.org/format_2195A serialisation format conforming to the Open Biomedical Ontologies (OBO) model.OBO formathttp://edamontology.org/format_2196OBO ontology text format.OBOhttp://edamontology.org/format_2549OBO ontology XML format.OBO-XMLhttp://edamontology.org/format_2550A serialisation format conforming to the Web Ontology Language (OWL) model.OWL formathttp://edamontology.org/format_2197A human-readable encoding for the Web Ontology Language (OWL).OWL Functional Syntaxhttp://edamontology.org/format_3252A syntax for writing OWL class expressions.Manchester OWL Syntaxhttp://edamontology.org/format_3253OWL ontology XML serialisation format.OWL/XMLOWLhttp://edamontology.org/format_3262A serialisation format conforming to the Resource Description Framework (RDF) model.RDF formatResource Description Framework formathttp://edamontology.org/format_2376A serialisation format conforming to the Web Ontology Language (OWL) model.OWL formathttp://edamontology.org/format_2197A human-readable encoding for the Web Ontology Language (OWL).OWL Functional Syntaxhttp://edamontology.org/format_3252A syntax for writing OWL class expressions.Manchester OWL Syntaxhttp://edamontology.org/format_3253OWL ontology XML serialisation format.OWL/XMLOWLhttp://edamontology.org/format_3262The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.Turtlehttp://edamontology.org/format_3255A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.N-Tripleshttp://edamontology.org/format_3256A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.Notation3N3http://edamontology.org/format_3257Resource Description Framework (RDF) XML format.RDF/XMLhttp://edamontology.org/format_3261JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).UniProtKB RDFUniProt RDF/XMLUniProt RDF/XML formatUniProtKB RDF/XMLUniProtKB RDF/XML formatUniProt RDF formatUniProtKB RDF formatUniProt RDFhttp://edamontology.org/format_3771A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784A superset of the "Description-Logic Knowledge Representation System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort".KRSS2 Syntaxhttp://edamontology.org/format_3254Format of a raw molecular sequence (i.e. the alphabet used).Raw sequence formathttp://edamontology.org/format_2571Alphabet for a nucleotide sequence with possible ambiguity, unknown positions and non-sequence characters.nucleotidehttp://edamontology.org/format_1207Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.pure nucleotidehttp://edamontology.org/format_1210Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence with possible ambiguity, unknown positions and non-sequence characters.dnahttp://edamontology.org/format_1212Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence with possible ambiguity, unknown positions and non-sequence characters.rnahttp://edamontology.org/format_1213Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a protein sequence with possible ambiguity, unknown positions and non-sequence characters.proteinhttp://edamontology.org/format_1208Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.pure proteinhttp://edamontology.org/format_1219Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_2607Raw sequence format with no non-sequence characters.rawhttp://edamontology.org/format_1957Alphabet for molecular sequence with possible unknown positions but without non-sequence characters.purehttp://edamontology.org/format_2094Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous purehttp://edamontology.org/format_1206Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for a nucleotide sequence with possible ambiguity and unknown positions but without non-sequence characters.pure nucleotidehttp://edamontology.org/format_1210Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure dnahttp://edamontology.org/format_1215Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters.pure rnahttp://edamontology.org/format_1217Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters.pure proteinhttp://edamontology.org/format_1219Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous purehttp://edamontology.org/format_2567Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_2607Alphabet for a molecular sequence with possible unknown positions but possibly with non-sequence characters.unpurehttp://edamontology.org/format_2095Alphabet for the consensus of two or more molecular sequences.consensushttp://edamontology.org/format_1209Alphabet for a molecular sequence with possible unknown positions but without ambiguity characters.unambiguous sequencehttp://edamontology.org/format_2096Alphabet for a molecular sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous purehttp://edamontology.org/format_1206Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters .unambiguous pure nucleotidehttp://edamontology.org/format_1211Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure dnahttp://edamontology.org/format_1214Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure rna sequencehttp://edamontology.org/format_1216Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters.unambiguous pure proteinhttp://edamontology.org/format_1218Alphabet for a molecular sequence with possible unknown positions and possible ambiguity characters.ambiguoushttp://edamontology.org/format_2097Alphabet for the consensus of two or more molecular sequences.consensushttp://edamontology.org/format_1209BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.BioXSD (XML)BioXSD in XMLBioXSD+XMLBioXSD XML formatBioXSD in XML formatBioXSD XMLhttp://edamontology.org/format_2352Alphabet for a molecular sequence without any unknown positions or ambiguity characters.completely unambiguoushttp://edamontology.org/format_2566Alphabet for a molecular sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous purehttp://edamontology.org/format_2567Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters .completely unambiguous pure nucleotidehttp://edamontology.org/format_2568Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure dnahttp://edamontology.org/format_2569Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure rna sequencehttp://edamontology.org/format_2570Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters.completely unambiguous pure proteinhttp://edamontology.org/format_26072bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.2bithttp://edamontology.org/format_3009.nib (nibble) binary format of a nucleotide sequence using 4 bits per nucleotide (including unknown) and its lower-case 'masking'..nibhttp://edamontology.org/format_3010BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.BioYAMLBioXSD BioYAMLBioXSD in YAML formatBioYAML formatBioXSD YAML formatBioXSD/GTrack BioYAMLBioYAML (BioXSD data model)BioXSD+YAMLBioXSD BioYAML formatBioXSD YAMLBioXSD in YAMLBioXSD|GTrack BioYAMLBioXSD|BioJSON|BioYAML BioYAMLBioYAML format (BioXSD)BioYAML (BioXSD)http://edamontology.org/format_3773Format of a bibliographic reference.Bibliographic reference formathttp://edamontology.org/format_2848Format of bibliographic reference as used by the PubMed database.PubMed citationhttp://edamontology.org/format_1734Format for abstracts of scientific articles from the Medline database.Medline Display Formathttp://edamontology.org/format_1735CiteXplore 'core' citation format including title, journal, authors and abstract.CiteXplore-corehttp://edamontology.org/format_1736CiteXplore 'all' citation format includes all known details such as Mesh terms and cross-references.CiteXplore-allhttp://edamontology.org/format_1737Format of sequence variation annotation.Sequence variation annotation formathttp://edamontology.org/format_2921Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).VCFhttp://edamontology.org/format_3016Genome Variation Format (GVF). A GFF3-compatible format with defined header and attribute tags for sequence variation.GVFhttp://edamontology.org/format_3019BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation).BCFhttp://edamontology.org/format_3020Ensembl standard format for variation data.Ensembl variation file formathttp://edamontology.org/format_3499Data format used by the SQLite database conformant to the Gemini schema.Gemini SQLite formathttp://edamontology.org/format_3622Format of a matrix (array) of numerical values.Matrix formathttp://edamontology.org/format_3033Data format for an amino acid index.Amino acid index formathttp://edamontology.org/format_2017Amino acid index format used by the AAindex database.aaindexhttp://edamontology.org/format_1504Format of a matrix of 3D-1D scores (amino acid environment probabilities).3D-1D scoring matrix formathttp://edamontology.org/format_2064Binary format used by MATLAB files to store workspace variables.MATMATLAB file formatMAT file format.mat file formathttp://edamontology.org/format_3626Format of data concerning the classification of the sequences and/or structures of protein structural domain(s).Protein domain classification formathttp://edamontology.org/format_3097Format of raw SCOP domain classification data files.Raw SCOP domain classification formathttp://edamontology.org/format_3098Format of raw CATH domain classification data files.Raw CATH domain classification formathttp://edamontology.org/format_3099Format of summary of domain classification information for a CATH domain.CATH domain report formathttp://edamontology.org/format_3100Data format for a report of information derived from a biological pathway or network.Biological pathway or network report formathttp://edamontology.org/format_3166Systems Biology Result Markup Language (SBRML), the standard XML format for simulated or calculated results (e.g. trajectories) of systems biology models.SBRMLhttp://edamontology.org/format_3155CopasiML, the native format of COPASI.CopasiMLhttp://edamontology.org/format_3239Data format for annotation on a laboratory experiment.Experiment annotation formathttp://edamontology.org/format_3167Format for information about a microarray experimental per se (not the data generated from that experiment).Microarray experiment data formathttp://edamontology.org/format_2056Affymetrix data file format for information about experimental conditions and protocols.affymetrix-expAffymetrix experimental conditions data file formathttp://edamontology.org/format_1641GCDML XML format for genome and metagenome metadata according to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic Standards Consortium (GSC).GCDMLhttp://edamontology.org/format_3163GelML is the format for describing the process of gel electrophoresis, standardised by HUPO PSI PS.GelMLhttp://edamontology.org/format_3249spML is the format for describing proteomics sample processing, other than using gels, prior to mass spectrometric protein identification, standardised by HUPO PSI PS. It may also be applicable for metabolomics.spMLhttp://edamontology.org/format_3250qcML is an XML format for quality-related data of mass spectrometry and other high-throughput measurements.qcMLhttp://edamontology.org/format_3683PRIDE XML is an XML format for mass spectra, peptide and protein identifications, and metadata about a corresponding measurement, sample, experiment.PRIDE XMLhttp://edamontology.org/format_3684Simulation Experiment Description Markup Language (SED-ML) is an XML format for encoding simulation setups, according to the MIASE (Minimum Information About a Simulation Experiment) requirements.SED-MLhttp://edamontology.org/format_3685Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating all information necessary for a modeling and simulation project in systems biology.COMBINE OMEXhttp://edamontology.org/format_3686The Investigation / Study / Assay (ISA) tab-delimited (TAB) format incorporates metadata from experiments employing a combination of technologies.ISA-TABISA-Tabhttp://edamontology.org/format_3687Format for mass pectra and derived data, include peptide sequences etc.Mass spectrometry data formathttp://edamontology.org/format_3245mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.mzMLhttp://edamontology.org/format_3244TraML (Transition Markup Language) is the format for mass spectrometry transitions, standardised by HUPO PSI MSS.TraMLhttp://edamontology.org/format_3246mzIdentML is the exchange format for peptides and proteins identified from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of proteomics search engines.mzIdentMLhttp://edamontology.org/format_3247mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.mzQuantMLhttp://edamontology.org/format_3248Format used by netCDF software library for writing and reading chromatography-MS data files.netCDFANDI-MShttp://edamontology.org/format_3650Mascot Generic Format. Encodes multiple MS/MS spectra in a single file.MGFhttp://edamontology.org/format_3651Spectral data format file where each spectrum is written to a separate file.dtahttp://edamontology.org/format_3652Spectral data file similar to dta.pklhttp://edamontology.org/format_3653Common file format for proteomics mass spectrometric data developed at the Seattle Proteome Center/Institute for Systems Biology.mzXMLhttp://edamontology.org/format_3654Open data format for the storage, exchange, and processing of peptide sequence assignments of MS/MS scans, intended to provide a common data output format for many different MS/MS search engines and subsequent peptide-level analyses.pepXMLhttp://edamontology.org/format_3655mzTab is a tab-delimited format for mass spectrometry-based proteomics and metabolomics results.mzTabhttp://edamontology.org/format_3681imzML is a data format for mass spectrometry imaging data. NB.: See comment.imzMLhttp://edamontology.org/format_3682qcML is an XML format for quality-related data of mass spectrometry and other high-throughput measurements.qcMLhttp://edamontology.org/format_3683PRIDE XML is an XML format for mass spectra, peptide and protein identifications, and metadata about a corresponding measurement, sample, experiment.PRIDE XMLhttp://edamontology.org/format_3684Proprietary mass-spectrometry format of Thermo Scientific's ProteomeDiscoverer software.MSFMagellan storage file formathttp://edamontology.org/format_3702Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex).WIFF formatwiffhttp://edamontology.org/format_3710Output format used by X! series search engines that is based on the XML language BIOML.X!Tandem XMLhttp://edamontology.org/format_3711Proprietary file format for mass spectrometry data from Thermo Scientific.Thermo RAWhttp://edamontology.org/format_3712"Raw" result file from Mascot database search.Mascot .dat filehttp://edamontology.org/format_3713Format of peak list files from Andromeda search engine (MaxQuant) that consist of arbitrarily many spectra.MaxQuant APL peaklist formatMaxQuant APLhttp://edamontology.org/format_3714A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.protXMLhttp://edamontology.org/format_3747"Raw" result file from SEQUEST database search.SEQUEST .out filehttp://edamontology.org/format_3758XML file format for files containing information about peptide identifications from mass spectrometry data analysis carried out with OpenMS.idXMLhttp://edamontology.org/format_3764Data format for a metadata on an individual and their genetic data.Individual genetic data formathttp://edamontology.org/format_3287The PED/MAP file describes data used by the Plink package.PED/MAPPlink PED/MAPhttp://edamontology.org/format_3288The MAP file describes SNPs and is used by the Plink package.MAPPlink MAPhttp://edamontology.org/format_3285The PED file describes individuals and genetic data and is used by the Plink package.PEDPlink PEDhttp://edamontology.org/format_3286Data index formathttp://edamontology.org/format_3326BAM indexing formatBAIhttp://edamontology.org/format_3327Bowtie format for indexed reference genome for "small" genomes.ebwtBowtie index formathttp://edamontology.org/format_3484Bowtie format for indexed reference genome for "large" genomes.ebwtlBowtie long index formathttp://edamontology.org/format_3491Index file format used by the samtools package to index TAB-delimited genome position files.Tabix index file formathttp://edamontology.org/format_3700Format of documents including word processor, spreadsheet and presentation.Document formathttp://edamontology.org/format_3507Microsoft Excel spreadsheet format.xlsMicrosoft Excel formathttp://edamontology.org/format_3468Microsoft Word format.docxMicrosoft Word formatdochttp://edamontology.org/format_3506Portable Document FormatPDFhttp://edamontology.org/format_3508MS Excel spreadsheet format consisting of a set of XML documents stored in a ZIP-compressed file.xlsxhttp://edamontology.org/format_3620Format used for images and image metadata.Image formathttp://edamontology.org/format_3547Medical image format corresponding to the Digital Imaging and Communications in Medicine (DICOM) standard. DICOM formathttp://edamontology.org/format_3548Medical image and metadata format of the Neuroimaging Informatics Technology Initiative. niiNIfTI-1 formathttp://edamontology.org/format_3549Text-based tagged file format for medical images generated using the MetaImage software package.mhdMetalmage formathttp://edamontology.org/format_3550Nearly Raw Rasta Data format designed to support scientific visualisation and image processing involving N-dimensional raster data.nrrdhttp://edamontology.org/format_3551Joint Picture Group file format for lossy graphics file. JPGhttp://edamontology.org/format_3579A versatile bitmap format.tiffhttp://edamontology.org/format_3591Standard bitmap storage format in the Microsoft Windows environment.bmphttp://edamontology.org/format_3592IM is a format used by LabEye and other applications based on the IFUNC image processing library.imhttp://edamontology.org/format_3593Photo CD format, which is the highest resolution format for images on a CD.pcdhttp://edamontology.org/format_3594PCX is an image file format that uses a simple form of run-length encoding. It is lossless. pcxhttp://edamontology.org/format_3595The PPM format is a lowest common denominator color image file format. ppmhttp://edamontology.org/format_3596PSD (Photoshop Document) is a proprietary file that allows the user to work with the images’ individual layers even after the file has been saved.psdhttp://edamontology.org/format_3597X BitMap is a plain text binary image format used by the X Window System used for storing cursor and icon bitmaps used in the X GUI. xbmhttp://edamontology.org/format_3598X PixMap (XPM) is an image file format used by the X Window System, it is intended primarily for creating icon pixmaps, and supports transparent pixels. xpmhttp://edamontology.org/format_3599RGB file format is the native raster graphics file format for Silicon Graphics workstations. rgbhttp://edamontology.org/format_3600The PBM format is a lowest common denominator monochrome file format. It serves as the common language of a large family of bitmap image conversion filters. pbmhttp://edamontology.org/format_3601The PGM format is a lowest common denominator grayscale file format. pgmhttp://edamontology.org/format_3602PNG is a file format for image compression. PNGpnghttp://edamontology.org/format_3603Scalable Vector Graphics (SVG) is an XML-based vector image format for two-dimensional graphics with support for interactivity and animation.SVGsvgScalable Vector Graphicshttp://edamontology.org/format_3604Sun Raster is a raster graphics file format used on SunOS by Sun Microsystemsrasthttp://edamontology.org/format_3605Blocked GNU Zip format.bgziphttp://edamontology.org/format_3615TAB-delimited genome position file index format.tabixhttp://edamontology.org/format_3616Image file format used by the Open Microscopy Environment (OME). OME-TIFFhttp://edamontology.org/format_3727Textual report format for sequence quality for reports from sequencing machines.Sequence quality report format (text)http://edamontology.org/format_3606FASTQ format subset for Phred sequencing quality score data only (no sequences).qualhttp://edamontology.org/format_3607FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format.qualsolexahttp://edamontology.org/format_3608FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8.qualilluminahttp://edamontology.org/format_3609FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data.qualsolidhttp://edamontology.org/format_3610FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers.qual454http://edamontology.org/format_3611Data format for graph data.Graph formathttp://edamontology.org/format_3617XML-based format used to store graph descriptions within Galaxy.xgmmlhttp://edamontology.org/format_3618A list of k-mers and their occurences in a dataset. Can also be used as an implicit De Bruijn graph.K-mer countgraphhttp://edamontology.org/format_3665Format of a data index of some type.Index formathttp://edamontology.org/format_3623An index of a genome database, indexed for use by the snpeff tool.snpeffdbhttp://edamontology.org/format_3624Data format for biodiversity data.Biodiversity data formathttp://edamontology.org/format_3706Exchange format of the Access to Biological Collections Data (ABCD) Schema; a standard for the access to and exchange of data about specimens and observations (primary biodiversity data).ABCD formatABCDhttp://edamontology.org/format_3708The BIological Observation Matrix (BIOM) is a format for representing biological sample by observation contingency tables in broad areas of comparative omics. The primary use of this format is to represent OTU tables and metagenome tables.BIOM formatBIological Observation Matrix formathttp://edamontology.org/format_3746The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD) is an international standard format for exchange of germplasm information.MCPDMCPD V.2MCPD V.1IPGRI MCPDBioversity MCPDMulti-Crop Passport Descriptors formatFAO MCPDMCPD formatMulti-Crop Passport Descriptorshttp://edamontology.org/format_3777A linked data format enables publishing structured data as linked data (Linked Data), so that the data can be interlinked and become more useful through semantic queries.Linked data formatLinked Data formathttp://edamontology.org/format_3748A serialisation format conforming to the Resource Description Framework (RDF) model.RDF formatResource Description Framework formathttp://edamontology.org/format_2376A serialisation format conforming to the Web Ontology Language (OWL) model.OWL formathttp://edamontology.org/format_2197A human-readable encoding for the Web Ontology Language (OWL).OWL Functional Syntaxhttp://edamontology.org/format_3252A syntax for writing OWL class expressions.Manchester OWL Syntaxhttp://edamontology.org/format_3253OWL ontology XML serialisation format.OWL/XMLOWLhttp://edamontology.org/format_3262The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.Turtlehttp://edamontology.org/format_3255A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.N-Tripleshttp://edamontology.org/format_3256A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.Notation3N3http://edamontology.org/format_3257Resource Description Framework (RDF) XML format.RDF/XMLhttp://edamontology.org/format_3261JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).UniProtKB RDFUniProt RDF/XMLUniProt RDF/XML formatUniProtKB RDF/XMLUniProtKB RDF/XML formatUniProt RDF formatUniProtKB RDF formatUniProt RDFhttp://edamontology.org/format_3771A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784Data format of an annotated text, e.g. with recognised entities, concepts, and relations.Annotated text formathttp://edamontology.org/format_3780OSCAR format of annotated chemical text.OSCAR formathttp://edamontology.org/format_1741JSON format of annotated scientific text used by PubAnnotations and other tools.PubAnnotation formathttp://edamontology.org/format_3781BioC is a standardised XML format for sharing and integrating text data and annotations.BioChttp://edamontology.org/format_3782Native textual export format of annotated scientific text from PubTator.PubTator formathttp://edamontology.org/format_3783A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784A family of similar formats of text annotation, used by BRAT and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013), BRAT format, BRAT standoff format, and similar.BioNLP Shared Task formatBRAT formatBRAT standoff formathttp://edamontology.org/format_3785A query language (format) for structured database queries.Query languageQuery formathttp://edamontology.org/format_3787A serialisation format conforming to the Resource Description Framework (RDF) model.RDF formatResource Description Framework formathttp://edamontology.org/format_2376A serialisation format conforming to the Web Ontology Language (OWL) model.OWL formathttp://edamontology.org/format_2197A human-readable encoding for the Web Ontology Language (OWL).OWL Functional Syntaxhttp://edamontology.org/format_3252A syntax for writing OWL class expressions.Manchester OWL Syntaxhttp://edamontology.org/format_3253OWL ontology XML serialisation format.OWL/XMLOWLhttp://edamontology.org/format_3262The Terse RDF Triple Language (Turtle) is a human-friendly serialisation format for RDF (Resource Description Framework) graphs.Turtlehttp://edamontology.org/format_3255A plain text serialisation format for RDF (Resource Description Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) format.N-Tripleshttp://edamontology.org/format_3256A shorthand non-XML serialisation of Resource Description Framework model, designed with human-readability in mind.Notation3N3http://edamontology.org/format_3257Resource Description Framework (RDF) XML format.RDF/XMLhttp://edamontology.org/format_3261JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784UniProtKB RDF sequence features format is an RDF format available for downloading UniProt entries (in RDF/XML).UniProtKB RDFUniProt RDF/XMLUniProt RDF/XML formatUniProtKB RDF/XMLUniProtKB RDF/XML formatUniProt RDF formatUniProtKB RDF formatUniProt RDFhttp://edamontology.org/format_3771A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured data using key-value pairs.JSONJavaScript Object Notationhttp://edamontology.org/format_3464JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.BioJSON (Jalview)JSON (Jalview)JSON format (Jalview)BioJSON format (Jalview)Jalview BioJSONJalview JSONJalview BioJSON formatJalview JSON formathttp://edamontology.org/format_3774JSON format of annotated scientific text used by PubAnnotations and other tools.PubAnnotation formathttp://edamontology.org/format_3781YAML (YAML Ain't Markup Language) is a human-readable tree-structured data serialisation language.YAMLYAML Ain't Markup Languagehttp://edamontology.org/format_3750JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured data using key-value pairs.JSONJavaScript Object Notationhttp://edamontology.org/format_3464JSON-LD, or JavaScript Object Notation for Linked Data, is a method of encoding Linked Data using JSON.JSON-LDJavaScript Object Notation for Linked Datahttp://edamontology.org/format_3749A format of text annotation using the linked-data Open Annotation Data Model, serialised typically in RDF or JSON-LD.Open Annotation formathttp://edamontology.org/format_3784BioJSON is a BioXSD-schema-based JSON format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web applications and APIs, and object-oriented programming.BioJSON (BioXSD)BioXSD+JSONBioXSD/GTrack BioJSONBioJSON (BioXSD data model)BioXSD BioJSON formatBioXSD|BioJSON|BioYAML BioJSONBioXSD in JSONBioJSON format (BioXSD)BioXSD JSONBioXSD JSON formatBioXSD|GTrack BioJSONBioXSD BioJSONBioXSD in JSON formathttp://edamontology.org/format_3772BioJSON is a JSON format of single multiple sequence alignments, with their annotations, features, and custom visualisation and application settings for the Jalview workbench.BioJSON (Jalview)JSON (Jalview)JSON format (Jalview)BioJSON format (Jalview)Jalview BioJSONJalview JSONJalview BioJSON formatJalview JSON formathttp://edamontology.org/format_3774JSON format of annotated scientific text used by PubAnnotations and other tools.PubAnnotation formathttp://edamontology.org/format_3781BioYAML is a BioXSD-schema-based YAML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, web APIs, human readability and editting, and object-oriented programming.BioYAMLBioXSD BioYAMLBioXSD in YAML formatBioYAML formatBioXSD YAML formatBioXSD/GTrack BioYAMLBioYAML (BioXSD data model)BioXSD+YAMLBioXSD BioYAML formatBioXSD YAMLBioXSD in YAMLBioXSD|GTrack BioYAMLBioXSD|BioJSON|BioYAML BioYAMLBioYAML format (BioXSD)BioYAML (BioXSD)http://edamontology.org/format_3773