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  description: A tool for gene and species tree co-estimation and reconciliation under
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  - term: Transcriptomics
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  description: MetaQuad is a tool designed to detect shared informative variants in
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  - term: Metagenomic sequencing
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  additionDate: '2019-05-27T16:59:15Z'
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  description: Evolutionary simulation framework that combines a powerful engine for
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    note: Run individual-based eco-evolutionary simulations with explicit genetics
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  description: PHIEmbed is a phage-host interaction prediction tool that uses protein
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  description: EpiSegMix is a segmentation tool based on a hidden Markov model with
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    pmcid: PMC11026141
    pmid: '38565260'
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  relation: []
  toolType:
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  topic:
  - term: ChIP-seq
    uri: http://edamontology.org/topic_3169
  - term: Epigenetics
    uri: http://edamontology.org/topic_3295
  - term: Chromosome conformation capture
    uri: http://edamontology.org/topic_3940
  - term: Statistics and probability
    uri: http://edamontology.org/topic_2269
  validated: 0
  version: []
- accessibility: Open access
  additionDate: '2024-05-03T08:51:56.083497Z'
  biotoolsCURIE: biotools:emvc-2
  biotoolsID: emvc-2
  collectionID: []
  community: null
  confidence_flag: tool
  cost: Free of charge
  credit:
  - email: iochoal@unav.es
    fundrefid: null
    gridid: null
    name: Idoia Ochoa
    note: null
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    rorid: null
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    url: null
  - email: alba.pages@upc.edu
    fundrefid: null
    gridid: null
    name: Alba Pagès-Zamora
    note: null
    orcidid: null
    rorid: null
    typeEntity: Person
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    url: null
  description: Single-nucleotide variant caller based on expectation maximization.
  documentation: []
  download: []
  editPermission:
    authors: []
    type: private
  elixirCommunity: []
  elixirNode: []
  elixirPlatform: []
  elixir_badge: 0
  function:
  - cmd: null
    input: []
    note: null
    operation:
    - term: Statistical calculation
      uri: http://edamontology.org/operation_2238
    - term: Genotyping
      uri: http://edamontology.org/operation_3196
    - term: Variant filtering
      uri: http://edamontology.org/operation_3675
    output: []
  homepage: https://github.com/guilledufort/EMVC-2
  homepage_status: 0
  language:
  - C
  - Python
  lastUpdate: '2024-05-03T08:51:56.086923Z'
  license: MIT
  link: []
  maturity: null
  name: EMVC-2
  operatingSystem: []
  otherID: []
  owner: Pub2Tools
  publication:
  - doi: 10.1093/BIOINFORMATICS/BTAD681
    metadata: null
    note: null
    pmcid: null
    pmid: '37963064'
    type: []
    version: null
  relation: []
  toolType:
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  topic:
  - term: Sequencing
    uri: http://edamontology.org/topic_3168
  - term: Personalised medicine
    uri: http://edamontology.org/topic_3577
  - term: Genotype and phenotype
    uri: http://edamontology.org/topic_0625
  validated: 0
  version: []
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