Genome Database for Rosaceae (GDR)Contains all publically available Rosaceae sequences including annotated peach, strawberry and almond EST sequences and the genetically anchored peach physical map.http://www.rosaceae.org/gdrbiotools:gdrRRID:SCR_012756rridDatabase portalhttp://edamontology.org/topic_0102Mappinghttp://edamontology.org/topic_3512Gene transcriptshttp://edamontology.org/topic_2885DNA polymorphismhttp://edamontology.org/topic_3318Physicshttp://edamontology.org/topic_0199Genetic variationLinuxWindowsMacPerlhttp://edamontology.org/operation_2429Mappinghttp://edamontology.org/operation_2871Sequence tagged site (STS) mappinghttp://edamontology.org/operation_0282Genetic mappinghttp://edamontology.org/operation_0526EST assemblyhttp://edamontology.org/operation_2944Physical mappinghttps://www.rosaceae.org/userManualUser manual10.1186/1471-2105-5-13015357877PMC51792810.1093/nar/gkm80317932055PMC2238863Contact Formhttps://www.rosaceae.org/contactPersonPrimary contactTASSELSoftware package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.http://www.maizegenetics.net/tasseltasselbiotools:tasselRRID:SCR_012837rridCommand-line toolDesktop applicationhttp://edamontology.org/topic_3517GWAS studyhttp://edamontology.org/topic_0102MappingLinuxWindowsMacJavaLGPL-2.1Animal and Crop Genomicshttp://edamontology.org/operation_0283Linkage analysishttp://edamontology.org/operation_0488Linkage disequilibrium calculationhttps://bitbucket.org/tasseladmin/tassel-5-source/wiki/UserManualUser manual10.1093/bioinformatics/btm30817586829Primarytassel@googlegroups.comPersonPrimary contactCarrotOmicsCarrotOmics is an integrated web-based relational database, developed to house and integrate genomic, genetic and breeding data for carrot and related species. CarrotOmics includes genome assemblies, annotated transcripts, traits, maps, and markers being generated and used by carrot researchers.https://carrotomics.org/carrotomicsbiotools:carrotomicsDatabase portalWeb applicationhttp://edamontology.org/topic_0102Mappinghttp://edamontology.org/topic_0196Sequence assemblyhttp://edamontology.org/topic_0625Genotype and phenotypehttp://edamontology.org/topic_3293Phylogeneticshttp://edamontology.org/topic_2885DNA polymorphismMacLinuxWindowsOtherFree of chargehttp://edamontology.org/operation_0525Genome assemblyhttp://edamontology.org/operation_0282Genetic mappinghttp://edamontology.org/operation_0526EST assemblyhttp://edamontology.org/operation_2421Database searchhttp://edamontology.org/operation_3258Transcriptome assemblyhttps://www.carrotomics.org/userManualGeneral10.1093/database/baac07936069936PMC9450951Philipp W Simonphilipp.simon@usda.govhttps://orcid.org/0000-0001-6978-6062PersonWilliam R RollingFunMappOneUser-friendly graphical interface that allows to visualize and summarize the functional annotations of one or multiple molecular biology experiments at once.https://github.com/Greco-Lab/FunMappOneFunMappOnebiotools:FunMappOneDesktop applicationhttp://edamontology.org/topic_0602Molecular interactions, pathways and networkshttp://edamontology.org/topic_0089Ontology and terminologyhttp://edamontology.org/topic_0621Model organismsLinuxWindowsMacRGPL-3.0MatureFree of chargeOpen accesshttp://edamontology.org/operation_3501Enrichment analysishttp://edamontology.org/operation_3432Clusteringhttp://edamontology.org/operation_2495Expression analysishttps://github.com/Greco-Lab/FunMappOne/issuesIssue trackerhttps://usermanual.wiki/Document/UserManual.999755866.pdfUser manual10.1186/s12859-019-2639-230767762PMC6376640PrimarymineXpertmineXpert is a graphical user interface software piece that allows the user to: - load mass spectrometry data files [ (x,y) text files or mzML standard format ] - visualize the TIC chromatogram and the intensity=(mz, dt) colormap in case of ion mobility mass spectrometry - integrate the mass data in many different ways and display them, effectively permitting the exploration of the mass data in their full depth - many other featureshttp://msxpertsuite.orgmineXpertbiotools:mineXpertdoi:10.1021/acs.jproteome.9b00099doiScriptDesktop applicationhttp://edamontology.org/topic_3292Biochemistryhttp://edamontology.org/topic_3370Analytical chemistryhttp://edamontology.org/topic_3332Computational chemistryLinuxWindowsMacGPL-3.0MatureFree of chargeOpen accessToolsFrancehttp://edamontology.org/operation_3203Chromatogram visualisationhttp://edamontology.org/operation_3694Mass spectrum visualisationhttp://edamontology.org/operation_3632Isotopic distributions calculationhttp://edamontology.org/data_2536Mass spectrometry data

http://edamontology.org/data_2884Plot

http://msxpertsuite.orgOtherMain software sitehttps://pubs.acs.org/doi/10.1021/acs.jproteome.9b00099OtherPublication at the American Chemical Society web sitehttps://www.ncbi.nlm.nih.gov/pubmed/30950277OtherPubmed record pagehttps://sourcesup.renater.fr/frs/?group_id=3534Downloads pagehttp://msxpertsuite.org/wiki/pmwiki.php/Main/UserManualUser manual10.1021/acs.jproteome.9b0009930950277Primary