List all resources, or create a new resource.

GET /api/t/?format=api&link=&quot%3B=&quot%3BIssue+tracker=
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 29658,
    "next": "?page=2",
    "previous": null,
    "list": [
        {
            "name": "CRISPResso2",
            "description": "Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments. CRISPResso2 can be used to analyze genome editing outcomes using cleaving nucleases (e.g. Cas9 or Cpf1) or noncleaving nucleases (e.g. base editors).",
            "homepage": "https://github.com/pinellolab/CRISPResso2",
            "biotoolsID": "crispresso2",
            "biotoolsCURIE": "biotools:crispresso2",
            "version": [
                "v2.3.0"
            ],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_0496",
                            "term": "Global alignment"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0491",
                            "term": "Pairwise sequence alignment"
                        },
                        {
                            "uri": "http://edamontology.org/operation_2995",
                            "term": "Sequence classification"
                        }
                    ],
                    "input": [
                        {
                            "data": {
                                "uri": "http://edamontology.org/data_3494",
                                "term": "DNA sequence"
                            },
                            "format": []
                        }
                    ],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Command-line tool",
                "Web application"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_0091",
                    "term": "Bioinformatics"
                },
                {
                    "uri": "http://edamontology.org/topic_0077",
                    "term": "Nucleic acids"
                }
            ],
            "operatingSystem": [],
            "language": [
                "Python"
            ],
            "license": "Proprietary",
            "collectionID": [
                "CRISPR"
            ],
            "maturity": "Mature",
            "cost": "Free of charge (with restrictions)",
            "accessibility": "Open access (with restrictions)",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [
                {
                    "url": "https://github.com/pinellolab/CRISPResso2",
                    "type": [
                        "Repository"
                    ],
                    "note": null
                },
                {
                    "url": "https://crispresso2.com",
                    "type": [
                        "Other"
                    ],
                    "note": null
                }
            ],
            "download": [
                {
                    "url": "https://hub.docker.com/layers/pinellolab/crispresso2/v2.3.0/images/sha256-e359f5751a64b82eb9332d7172b0e15fc5574454bc780572455979f24ce91391?context=explore",
                    "type": "Container file",
                    "note": null,
                    "version": "v2.3.0"
                }
            ],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1038/s41587-019-0032-3",
                    "pmid": null,
                    "pmcid": null,
                    "type": [
                        "Primary"
                    ],
                    "version": null,
                    "note": null,
                    "metadata": null
                },
                {
                    "doi": "10.1038/nbt.3583",
                    "pmid": null,
                    "pmcid": null,
                    "type": [
                        "Primary"
                    ],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Cole Lyman",
                    "email": "licensing@edilytics.com",
                    "url": "https://edilytics.com",
                    "orcidid": "https://orcid.org/0000-0001-7921-165X",
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [
                        "Primary contact",
                        "Developer"
                    ],
                    "note": null
                }
            ],
            "community": null,
            "owner": "colelyman",
            "additionDate": "2024-05-06T21:44:52.521764Z",
            "lastUpdate": "2024-05-06T21:47:17.893518Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": null
        },
        {
            "name": "3Dmapper",
            "description": "A command line tool for bio bank-scale mapping of variants to protein structures.",
            "homepage": "https://github.com/vicruiser/3Dmapper",
            "biotoolsID": "3dmapper",
            "biotoolsCURIE": "biotools:3dmapper",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_3227",
                            "term": "Variant calling"
                        },
                        {
                            "uri": "http://edamontology.org/operation_2429",
                            "term": "Mapping"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0321",
                            "term": "Protein structure validation"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0477",
                            "term": "Protein modelling"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0331",
                            "term": "Variant effect prediction"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Command-line tool"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_2814",
                    "term": "Protein structure analysis"
                },
                {
                    "uri": "http://edamontology.org/topic_0102",
                    "term": "Mapping"
                },
                {
                    "uri": "http://edamontology.org/topic_3120",
                    "term": "Protein variants"
                },
                {
                    "uri": "http://edamontology.org/topic_0622",
                    "term": "Genomics"
                },
                {
                    "uri": "http://edamontology.org/topic_3676",
                    "term": "Exome sequencing"
                }
            ],
            "operatingSystem": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "language": [
                "Python",
                "R"
            ],
            "license": "GPL-3.0",
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": null,
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1093/bioinformatics/btae171",
                    "pmid": "38565273",
                    "pmcid": "PMC11018535",
                    "type": [
                        "Primary"
                    ],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Victoria Ruiz-Serra",
                    "email": "victoria.ruizserra@bsc.es",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Eduard Porta-Pardo",
                    "email": "eduard.porta@bsc.es",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T11:57:31.811483Z",
            "lastUpdate": "2024-05-06T11:57:31.813584Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "Deep-HPI-pred",
            "description": "An R-Shiny applet for network-based classification and prediction of Host-Pathogen protein-protein interactions.",
            "homepage": "https://cbi.gxu.edu.cn/shiny-apps/Deep-HPI-pred/",
            "biotoolsID": "deep-hpi-pred",
            "biotoolsCURIE": "biotools:deep-hpi-pred",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_2492",
                            "term": "Protein interaction prediction"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3925",
                            "term": "Network visualisation"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3461",
                            "term": "Virulence prediction"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Web application"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_0128",
                    "term": "Protein interactions"
                },
                {
                    "uri": "http://edamontology.org/topic_3474",
                    "term": "Machine learning"
                },
                {
                    "uri": "http://edamontology.org/topic_3324",
                    "term": "Infectious disease"
                },
                {
                    "uri": "http://edamontology.org/topic_0121",
                    "term": "Proteomics"
                }
            ],
            "operatingSystem": [
                "Mac",
                "Linux",
                "Windows"
            ],
            "language": [
                "R"
            ],
            "license": null,
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [
                {
                    "url": "https://github.com/tahirulqamar/Deep-HPI-pred",
                    "type": [
                        "Repository"
                    ],
                    "note": null
                }
            ],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1016/j.csbj.2023.12.010",
                    "pmid": "38192372",
                    "pmcid": "PMC10772389",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Muhammad Tahir ul Qamar",
                    "email": "m.tahirulqamar@hotmail.com",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Ling-Ling Chen",
                    "email": "llchen@gxu.edu.cn",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T11:43:44.414423Z",
            "lastUpdate": "2024-05-06T11:43:44.416963Z",
            "editPermission": {
                "type": "public",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "ccml",
            "description": "Consensus clustering tool for multi-omics integrative prediction in cohorts with unequal sample coverage.\nConsensus clustering, also called meta-clustering or cluster ensembles, has been increasingly used in clinical data. Current consensus clustering methods tend to ensemble a number of different clusters from mathematical replicates with similar sample coverage. As the fact of common variety of sample coverage in the real-world data, a new consensus clustering strategy dealing with such biological replicates is required. This is a two-step consensus clustering package, which is used to input multiple predictive labels with different sample coverage (missing labels).",
            "homepage": "https://CRAN.R-project.org/package=ccml",
            "biotoolsID": "ccml",
            "biotoolsCURIE": "biotools:ccml",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_3432",
                            "term": "Clustering"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3435",
                            "term": "Standardisation and normalisation"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3196",
                            "term": "Genotyping"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Library"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3315",
                    "term": "Mathematics"
                },
                {
                    "uri": "http://edamontology.org/topic_3277",
                    "term": "Sample collections"
                },
                {
                    "uri": "http://edamontology.org/topic_3391",
                    "term": "Omics"
                },
                {
                    "uri": "http://edamontology.org/topic_3307",
                    "term": "Computational biology"
                }
            ],
            "operatingSystem": [],
            "language": [
                "R"
            ],
            "license": "GPL-2.0",
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1093/bib/bbad501",
                    "pmid": "38205966",
                    "pmcid": "PMC10782800",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Meng Zhou",
                    "email": "zhoumeng@wmu.edu.cn",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-9987-9024",
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Åsa M Wheelock",
                    "email": "asa.wheelock@ki.se",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8013-2745",
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T11:36:31.549546Z",
            "lastUpdate": "2024-05-06T11:36:31.552522Z",
            "editPermission": {
                "type": "public",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "AntDAS-DDA",
            "description": "A New Platform for Data-Dependent Acquisition Mode-Based Untargeted Metabolomic Profiling Analysis with Advantage of Recognizing Insource Fragment Ions to Improve Compound Identification.",
            "homepage": "http://www.pmdb.org.cn/antdasdda",
            "biotoolsID": "antdas-dda",
            "biotoolsCURIE": "biotools:antdas-dda",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_3646",
                            "term": "Peptide database search"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3937",
                            "term": "Feature extraction"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3767",
                            "term": "Protein identification"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Web application"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3172",
                    "term": "Metabolomics"
                },
                {
                    "uri": "http://edamontology.org/topic_3520",
                    "term": "Proteomics experiment"
                },
                {
                    "uri": "http://edamontology.org/topic_0780",
                    "term": "Plant biology"
                }
            ],
            "operatingSystem": [],
            "language": [],
            "license": null,
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1021/ACS.ANALCHEM.2C01795",
                    "pmid": "36599407",
                    "pmcid": null,
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Xing-Cai Wang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:47:46.843170Z",
            "lastUpdate": "2024-05-06T09:47:46.845847Z",
            "editPermission": {
                "type": "public",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "VIBE",
            "description": "A pipeline-friendly software tool for genome diagnostics to prioritize genes by matching patient symptoms to literature.",
            "homepage": "https://github.com/molgenis/vibe",
            "biotoolsID": "vibe",
            "biotoolsCURIE": "biotools:vibe",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_3226",
                            "term": "Variant prioritisation"
                        },
                        {
                            "uri": "http://edamontology.org/operation_2422",
                            "term": "Data retrieval"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3096",
                            "term": "Editing"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Workflow"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3298",
                    "term": "Phenomics"
                },
                {
                    "uri": "http://edamontology.org/topic_0622",
                    "term": "Genomics"
                },
                {
                    "uri": "http://edamontology.org/topic_3676",
                    "term": "Exome sequencing"
                },
                {
                    "uri": "http://edamontology.org/topic_0089",
                    "term": "Ontology and terminology"
                }
            ],
            "operatingSystem": [],
            "language": [
                "Java",
                "Shell",
                "R",
                "Python"
            ],
            "license": "LGPL-3.0",
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [
                {
                    "url": "https://github.com/molgenis/vibe-suppl",
                    "type": [
                        "Repository"
                    ],
                    "note": null
                }
            ],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1002/GGN2.10023",
                    "pmid": "36619248",
                    "pmcid": "PMC9744518",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "K. Joeri van der Velde",
                    "email": "k.j.van.der.velde@umcg.nl",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Morris A. Swertz",
                    "email": "m.a.swertz@rug.nl",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:46:36.012886Z",
            "lastUpdate": "2024-05-06T09:46:36.015424Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "MIGRENE",
            "description": "The toolbox for microbial and individualized GEMs, reactobiome and community network modelling.",
            "homepage": "https://github.com/sysbiomelab/MIGRENE",
            "biotoolsID": "migrene",
            "biotoolsCURIE": "biotools:migrene",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_3660",
                            "term": "Metabolic network modelling"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3929",
                            "term": "Metabolic pathway prediction"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Workflow"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3697",
                    "term": "Microbial ecology"
                },
                {
                    "uri": "http://edamontology.org/topic_3174",
                    "term": "Metagenomics"
                },
                {
                    "uri": "http://edamontology.org/topic_3407",
                    "term": "Endocrinology and metabolism"
                },
                {
                    "uri": "http://edamontology.org/topic_0602",
                    "term": "Molecular interactions, pathways and networks"
                }
            ],
            "operatingSystem": [],
            "language": [
                "MATLAB"
            ],
            "license": null,
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.3390/metabo14030132",
                    "pmid": "38535292",
                    "pmcid": "PMC10972203",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Gholamreza Bidkhori",
                    "email": "gholamreza.bidhkori@kcl.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Saeed Shoaie",
                    "email": "saeed.shoaie@kcl.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:44:15.356939Z",
            "lastUpdate": "2024-05-06T09:44:15.359449Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "baymedr",
            "description": "R package and web application for the calculation of Bayes factors for superiority, equivalence, and non-inferiority designs.",
            "homepage": "https://cran.r-project.org/web/packages/baymedr/index.html",
            "biotoolsID": "baymedr",
            "biotoolsCURIE": "biotools:baymedr",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_2238",
                            "term": "Statistical calculation"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Library"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3303",
                    "term": "Medicine"
                },
                {
                    "uri": "http://edamontology.org/topic_3379",
                    "term": "Preclinical and clinical studies"
                },
                {
                    "uri": "http://edamontology.org/topic_2269",
                    "term": "Statistics and probability"
                }
            ],
            "operatingSystem": [],
            "language": [
                "R"
            ],
            "license": "GPL-3.0",
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1186/S12874-023-02097-Y",
                    "pmid": "38001458",
                    "pmcid": "PMC10668366",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Maximilian Linde",
                    "email": "maximilian.linde@gesis.org",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8421-090X",
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:41:40.146085Z",
            "lastUpdate": "2024-05-06T09:41:40.148511Z",
            "editPermission": {
                "type": "public",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "MAJIQlopedia",
            "description": "Encyclopedia of RNA splicing variations in human tissues and cancer.",
            "homepage": "https://majiq.biociphers.org/majiqlopedia/",
            "biotoolsID": "majiqlopedia",
            "biotoolsCURIE": "biotools:majiqlopedia",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_0264",
                            "term": "Alternative splicing prediction"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3435",
                            "term": "Standardisation and normalisation"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0446",
                            "term": "Exonic splicing enhancer prediction"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3799",
                            "term": "Quantification"
                        },
                        {
                            "uri": "http://edamontology.org/operation_3192",
                            "term": "Sequence trimming"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Database portal"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_3320",
                    "term": "RNA splicing"
                },
                {
                    "uri": "http://edamontology.org/topic_2640",
                    "term": "Oncology"
                },
                {
                    "uri": "http://edamontology.org/topic_3512",
                    "term": "Gene transcripts"
                },
                {
                    "uri": "http://edamontology.org/topic_3170",
                    "term": "RNA-Seq"
                },
                {
                    "uri": "http://edamontology.org/topic_3308",
                    "term": "Transcriptomics"
                }
            ],
            "operatingSystem": [],
            "language": [],
            "license": null,
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1093/NAR/GKAD1043",
                    "pmid": "37953365",
                    "pmcid": "PMC10767883",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Yoseph Barash",
                    "email": "yosephb@seas.upenn.edu",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Mathieu Quesnel-Vallières",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:37:29.797023Z",
            "lastUpdate": "2024-05-06T09:37:29.799867Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        },
        {
            "name": "IDPpub",
            "description": "Illuminating the Dark Phosphoproteome Through PubMed Mining.",
            "homepage": "http://idppub.ptmax.org",
            "biotoolsID": "idppub",
            "biotoolsCURIE": "biotools:idppub",
            "version": [],
            "otherID": [],
            "relation": [],
            "function": [
                {
                    "operation": [
                        {
                            "uri": "http://edamontology.org/operation_0306",
                            "term": "Text mining"
                        },
                        {
                            "uri": "http://edamontology.org/operation_0417",
                            "term": "PTM site prediction"
                        },
                        {
                            "uri": "http://edamontology.org/operation_2421",
                            "term": "Database search"
                        }
                    ],
                    "input": [],
                    "output": [],
                    "note": null,
                    "cmd": null
                }
            ],
            "toolType": [
                "Web application"
            ],
            "topic": [
                {
                    "uri": "http://edamontology.org/topic_0218",
                    "term": "Natural language processing"
                },
                {
                    "uri": "http://edamontology.org/topic_0601",
                    "term": "Protein modifications"
                },
                {
                    "uri": "http://edamontology.org/topic_0121",
                    "term": "Proteomics"
                },
                {
                    "uri": "http://edamontology.org/topic_0637",
                    "term": "Taxonomy"
                },
                {
                    "uri": "http://edamontology.org/topic_0602",
                    "term": "Molecular interactions, pathways and networks"
                }
            ],
            "operatingSystem": [],
            "language": [],
            "license": null,
            "collectionID": [],
            "maturity": null,
            "cost": "Free of charge",
            "accessibility": "Open access",
            "elixirPlatform": [],
            "elixirNode": [],
            "elixirCommunity": [],
            "link": [],
            "download": [],
            "documentation": [],
            "publication": [
                {
                    "doi": "10.1016/J.MCPRO.2023.100682",
                    "pmid": "37993103",
                    "pmcid": "PMC10716774",
                    "type": [],
                    "version": null,
                    "note": null,
                    "metadata": null
                }
            ],
            "credit": [
                {
                    "name": "Bing Zhang",
                    "email": "bing.zhang@bcm.edu",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                },
                {
                    "name": "Sara R Savage",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "rorid": null,
                    "fundrefid": null,
                    "typeEntity": "Person",
                    "typeRole": [],
                    "note": null
                }
            ],
            "community": null,
            "owner": "Pub2Tools",
            "additionDate": "2024-05-06T09:35:22.591259Z",
            "lastUpdate": "2024-05-06T09:35:22.593969Z",
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "validated": 0,
            "homepage_status": 0,
            "elixir_badge": 0,
            "confidence_flag": "tool"
        }
    ]
}