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  - term: Informatics
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  owner: Pub2Tools
  publication:
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    metadata: null
    note: null
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  toolType:
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  topic:
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  - term: Sequencing
    uri: http://edamontology.org/topic_3168
  validated: 0
  version: []
- accessibility: Open access
  additionDate: '2026-06-15T11:12:22.680275Z'
  biotoolsCURIE: biotools:pepkio-sequence-property-calculator
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  confidence_flag: null
  cost: Free of charge
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    typeRole:
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  description: Calculates sequence-derived molecular properties and related laboratory
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    modes through one API-backed workflow. Programmatic use is available through a
    Python library and command-line interface that submit run payloads and return
    structured result objects.
  documentation:
  - note: null
    type:
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  - note: null
    type:
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    note: One tool endpoint supports three modes (sequence, dilution, ligation) for
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    operation:
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    - term: Conversion
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  homepage_status: 0
  language:
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  lastUpdate: '2026-06-15T11:12:22.682431Z'
  license: MIT
  link:
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    type:
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  - note: null
    type:
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  toolType:
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  - Library
  - Web application
  topic:
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  - term: Laboratory techniques
    uri: http://edamontology.org/topic_3361
  - term: Biochemistry
    uri: http://edamontology.org/topic_3292
  validated: 0
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- accessibility: Open access
  additionDate: '2026-06-15T11:12:19.636052Z'
  biotoolsCURIE: biotools:pepkio-mol-mass-converter
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  credit:
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
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    typeRole:
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  description: Translates spectrophotometer and NanoDrop readings into mass and molar
    concentrations for dsDNA, ssDNA, ssRNA, and protein from a single anchor input,
    with optional sequence-specific nearest-neighbor extinction coefficients. A browser
    calculator supports bidirectional unit conversion, batch processing of up to ninety-six
    NanoDrop export rows, and A260/A280 purity interpretation with plain-language
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    Calculator arithmetic is hosted remotely; API clients transmit parameters and
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  documentation:
  - note: null
    type:
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    url: https://www.pepkio.com/tools/mol-mass-converter
  - note: null
    type:
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  function:
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    note: Web calculator for OD260, mass, and molar conversion across nucleic acids
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    - term: Conversion
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  language:
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  lastUpdate: '2026-06-15T11:12:19.638286Z'
  license: MIT
  link:
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  - note: null
    type:
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  toolType:
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  topic:
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  - term: Laboratory techniques
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  - term: Biochemistry
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  version:
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  additionDate: '2026-06-15T10:52:43.559019Z'
  biotoolsCURIE: biotools:pepkio-rcf-rpm-rotor-converter
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  credit:
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
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  description: Translates between centrifuge RPM and relative centrifugal force using
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    handles rpm_to_rcf and rcf_to_rpm with rotor presets or manual radii in mm; transfer
    mode maps a source RPM on one rotor to an equivalent target RPM at matched rmax
    RCF; batch mode processes multiple spin steps from CSV or row arrays. A browser
    calculator and a Python library with command-line interface submit the same parameters
    to the Pepkio Tools API and return structured results with optional methods text
    and safety warnings.
  documentation:
  - note: null
    type:
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    url: https://www.pepkio.com/tools/rcf-rpm-rotor-converter
  - note: null
    type:
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    note: Three modes (convert, transfer, batch) for RPM↔RCF conversion, rotor protocol
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    operation:
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    - term: Conversion
      uri: http://edamontology.org/operation_3434
    output: []
  homepage: https://www.pepkio.com/tools/rcf-rpm-rotor-converter
  homepage_status: 0
  language:
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  lastUpdate: '2026-06-15T10:52:43.562533Z'
  license: MIT
  link:
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  - note: null
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  toolType:
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  topic:
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  - term: Laboratory techniques
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  validated: 0
  version:
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  additionDate: '2026-06-15T09:48:37.590183Z'
  biotoolsCURIE: biotools:pepkio-bio-unit-converter
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  credit:
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
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    typeRole:
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  description: Performs laboratory unit conversions across molarity, OD600 cell density,
    C₁V₁ dilution, and related dimensional pairs from mass, volume, molecular weight,
    and organism-specific OD factors. A browser calculator combines four modes in
    one tabbed workspace with compound MW lookup, species-aware OD uncertainty ranges,
    cross-tab chaining, and shareable links; a Python library and command-line tool
    submit the same parameters to the Pepkio Tools API for scripted use. Calculator
    arithmetic for the API client is hosted remotely; the client transmits conversion
    inputs and returns structured results and shareable run identifiers.
  documentation:
  - note: null
    type:
    - General
    url: https://www.pepkio.com/tools/bio-unit-converter
  - note: null
    type:
    - User manual
    url: https://github.com/pepkio/pepkio-bio-unit-converter
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    note: Web calculator for molarity, OD600, dilution, and unit conversion in one
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    operation:
    - term: Statistical calculation
      uri: http://edamontology.org/operation_2238
    - term: Data handling
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  homepage: https://www.pepkio.com/tools/bio-unit-converter
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  language:
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  lastUpdate: '2026-06-15T09:48:37.593588Z'
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  link:
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  - note: null
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  toolType:
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  topic:
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  - term: Laboratory techniques
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  - term: Biochemistry
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  version:
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  additionDate: '2026-06-15T07:56:44.623352Z'
  biotoolsCURIE: biotools:pepkio-mendelian-cross-solver
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  confidence_flag: null
  cost: Free of charge
  credit:
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    fundrefid: null
    gridid: null
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
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    typeEntity: Project
    typeRole:
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  description: Constructs Punnett squares and offspring genotype and phenotype ratios
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    crosses from parent genotypes, with step-by-step walkthroughs and reduced ratio
    output. A browser calculator provides live grids, textbook presets, PNG and SVG
    export, and shareable links; a Python library and command-line tool submit the
    same parameters to the Pepkio Tools API for scripted use. Calculator arithmetic
    for the API client is hosted remotely; the client transmits cross inputs and returns
    structured grids, ratios, walkthroughs, and shareable run identifiers.
  documentation:
  - note: null
    type:
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    url: https://www.pepkio.com/tools/mendelian-cross-solver
  - note: null
    type:
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    url: https://github.com/pepkio/pepkio-mendelian-cross-solver
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    input: []
    note: Web calculator for Punnett squares across five inheritance modes; Python
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    operation:
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      uri: http://edamontology.org/operation_2238
    - term: Genetic variation analysis
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  homepage: https://www.pepkio.com/tools/mendelian-cross-solver
  homepage_status: 0
  language:
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  lastUpdate: '2026-06-15T07:56:44.626074Z'
  license: MIT
  link:
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  - note: null
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  toolType:
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  - Command-line tool
  topic:
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    uri: http://edamontology.org/topic_3053
  - term: Genotype and phenotype
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  validated: 0
  version:
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- accessibility: Open access
  additionDate: '2026-06-15T07:22:14.272830Z'
  biotoolsCURIE: biotools:pepkio-hwe-equilibrium-studio
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  credit:
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
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  description: Evaluates Hardy-Weinberg equilibrium for diploid loci with two to six
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    F, and plain-language verdicts from observed genotype counts, allele frequencies,
    or biallelic disease incidence. A browser calculator provides De Finetti plots,
    export, and Wright-Fisher simulation under selection, drift, mutation, and migration;
    a Python library and command-line tool submit the same parameters to the Pepkio
    Tools API for scripted use. Calculator arithmetic for the API client is hosted
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  documentation:
  - note: null
    type:
    - General
    url: https://www.pepkio.com/tools/hwe-equilibrium-studio
  - note: null
    type:
    - User manual
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    note: Web calculator for multiallelic HWE testing and Wright-Fisher simulation;
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    operation:
    - term: Allele frequency distribution analysis
      uri: http://edamontology.org/operation_0554
    - term: Genetic variation analysis
      uri: http://edamontology.org/operation_3197
    - term: Statistical calculation
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  homepage: https://www.pepkio.com/tools/hwe-equilibrium-studio
  homepage_status: 0
  language:
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  lastUpdate: '2026-06-15T07:22:14.277319Z'
  license: MIT
  link:
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    type:
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  - note: null
    type:
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  - note: null
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  toolType:
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  - Command-line tool
  - Library
  topic:
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    uri: http://edamontology.org/topic_3056
  - term: Genetics
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  description: Performs batch four-parameter and five-parameter logistic regression
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  toolType:
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  topic:
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  - term: Molecular biology
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  - term: Laboratory techniques
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  description: DeRR (Detection Dual T-cell receptor in single cell sequencing) is
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  biotoolsCURIE: biotools:microminer
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  description: MicroMiner assists in identifying single-residue substitutions in protein
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    - term: Structure database search
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    - term: Local structure alignment
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  language: []
  lastUpdate: '2026-06-12T09:55:54.271765Z'
  license: Other
  link:
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  maturity: Mature
  name: MicroMiner
  operatingSystem:
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  - Linux
  otherID: []
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    metadata: null
    note: null
    pmcid: null
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    type:
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  relation:
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  - term: Protein folding, stability and design
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  - term: Drug discovery
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  - term: Bioinformatics
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- accessibility: null
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  biotoolsCURIE: biotools:jamda
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  description: JAMDA enables the preparation of individual protein structures and
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  - note: null
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  download:
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  lastUpdate: '2026-06-12T09:54:09.726046Z'
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  link:
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  operatingSystem:
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  publication:
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    metadata: null
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  relation:
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  topic:
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  - term: Protein interactions
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  - term: Bioinformatics
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  - term: Drug discovery
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- accessibility: null
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  biotoolsCURIE: biotools:StructureProfiler
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  description: Three-dimensional protein structures play a vital role in drug design.
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  documentation:
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    type:
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  - note: A web API to run StructureProfiler calculations for protein structures stored
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  - note: Link to download the standalone tool from the NAOMI ChemBio Suite.
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  relation: []
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  topic:
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  - term: Drug discovery
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  description: WarPP predicts the position and orientation of water molecules in small-molecule
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    structures based on EDIAscorer results and interaction geometries as known from
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    observed water molecules. It is sufficiently fast for high-throughput analyses.
    It correctly places water molecules in approx. 80% of the cases. Users can export
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  - note: null
    type:
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    note: water molecule placement
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      format:
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  homepage: https://www.zbh.uni-hamburg.de/forschung/amd/software/warpp.html
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  language: []
  lastUpdate: '2026-06-12T09:49:28.516069Z'
  license: Other
  link:
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    type:
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  - note: A web API to run WarPP calculations for protein structures stored in the
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    type:
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  name: WarPP
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  toolType:
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  validated: 1
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- accessibility: null
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  description: LifeSoaks was designed to find solvent channels in macromolecular structures
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  documentation:
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  description: The electron density score for individual atoms (EDIA) quantifies the
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  lastUpdate: '2026-06-12T09:03:09.568414Z'
  license: Other
  link:
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    type:
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    type:
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  description: SIENA is a software pipeline enabling the fully automated construction
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  documentation:
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    type:
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  download:
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  description: DoGSite3 was developed for predicting robust and reliable small molecule
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  documentation:
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    note: small molecule binding site detection
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    - term: Protein modelling
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      format:
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    - data:
        term: Protein structure
        uri: http://edamontology.org/data_1460
      format:
      - term: PDB
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        term: Protein structure report
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      format:
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        uri: http://edamontology.org/format_2330
    - data:
        term: Map data
        uri: http://edamontology.org/data_2019
      format: []
  homepage: https://www.zbh.uni-hamburg.de/en/forschung/amd/software/dogsite3.html
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  lastUpdate: '2026-06-12T08:53:05.223278Z'
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  - note: A web service to run DoGSite3 calculations for protein structures stored
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    type:
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  - note: A web API to run DoGSite3 calculations for protein structures stored in
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    type:
    - Service
    url: https://proteins.plus/help/dogsite3_rest
  - note: Link to download the standalone tool from the NAOMI ChemBio Suite.
    type:
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    url: https://uhh.de/naomi
  maturity: Mature
  name: DoGSite3
  operatingSystem:
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    metadata: null
    note: null
    pmcid: null
    pmid: '37130052'
    type:
    - Primary
    version: null
  relation:
  - biotoolsID: geomine
    type: usedBy
  toolType:
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  topic:
  - term: Protein binding sites
    uri: http://edamontology.org/topic_3534
  - term: Structure analysis
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  - term: Drug discovery
    uri: http://edamontology.org/topic_3336
  - term: Molecular modelling
    uri: http://edamontology.org/topic_2275
  - term: Bioinformatics
    uri: http://edamontology.org/topic_0091
  - term: Protein properties
    uri: http://edamontology.org/topic_0123
  validated: 0
  version: []
- accessibility: null
  additionDate: '2017-08-03T18:52:54Z'
  biotoolsCURIE: biotools:obitools
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    fundrefid: null
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    name: Eric Coissac
    note: null
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    typeEntity: Person
    typeRole:
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  description: Set of python programs developed to simplify the manipulation of sequence
    files. They were mainly designed to help us for analyzing Next Generation Sequencer
    outputs (454 or Illumina) in the context of DNA Metabarcoding.
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  - note: null
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    metadata: null
    note: null
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    version: null
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  toolType:
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  topic:
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    uri: http://edamontology.org/topic_0080
  - term: DNA
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  - term: Sequencing
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  validated: 1
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  additionDate: '2017-08-03T18:59:55Z'
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    typeEntity: Person
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  description: The Semi-HMM-based Nucleic Acid Parser is a gene prediction tool.
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  - note: null
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    metadata:
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        introduce the SNAP gene finder which has been designed to be easily adaptable
        to a variety of genomes. In novel genomes without an appropriate gene finder,
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        results, and that the most compatible parameters may not come from the nearest
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        parameters, every genome needs dedicated gene finder. © 2004 Korf, licensee
        BioMed Central Ltd.
      authors:
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      citationCount: 2108
      date: '2004-05-14T00:00:00Z'
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    note: null
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  topic:
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  - term: DNA polymorphism
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  - term: Genetics
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  description: FlavoTyper is a bioinformatics tool that performs in silico serotyping
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    note: null
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  lastUpdate: '2026-06-10T17:14:53.654094Z'
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  owner: Salmam2
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  toolType:
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  topic:
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  - term: Genotype and phenotype
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  - term: Microbiology
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  - term: Veterinary medicine
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  additionDate: '2026-06-10T14:34:07.395380Z'
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  description: Utility that performs integrated analyses of 'gene' data (a set of
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    note: null
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  lastUpdate: '2026-06-10T14:34:07.398725Z'
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  topic:
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  additionDate: '2026-06-10T13:16:41.434931Z'
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    note: null
    operation:
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  lastUpdate: '2026-06-10T13:16:41.436989Z'
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  otherID: []
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  publication:
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    metadata: null
    note: null
    pmcid: null
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  topic:
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  validated: 0
  version:
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- accessibility: null
  additionDate: '2026-06-10T12:31:35.126196Z'
  biotoolsCURIE: biotools:dazz_db
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    note: null
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  additionDate: '2026-06-10T12:12:29.176436Z'
  biotoolsCURIE: biotools:cookiecutter_bioinformatics
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    input:
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    note: null
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  additionDate: '2026-06-07T04:02:15.529158Z'
  biotoolsCURIE: biotools:pepkio-well-plate-seeding-density-calculator
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  description: Derives cells per well and suspension pipette volumes for standard
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    note: Web calculator for bench seeding; Python library and CLI for API-backed
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  lastUpdate: '2026-06-07T04:02:36.627996Z'
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  toolType:
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  topic:
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  additionDate: '2026-06-07T03:07:06.267031Z'
  biotoolsCURIE: biotools:pepkio-absorbance-curve-calculator
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  description: Processes 96-well plate absorbance data through blank subtraction,
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    interactive grid entry with CSV and PDF export; a Python library and command-line
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    note: Web calculator for plate-based standard-curve fitting; Python library and
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  additionDate: '2026-06-07T01:12:57.723685Z'
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  description: Estimates PCR primer melting temperatures and polymerase-specific annealing
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  documentation:
  - note: null
    type:
    - General
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  - note: null
    type:
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    note: Web calculator for in-browser Tm/Ta planning; Python library and CLI for
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    - term: Nucleic acid thermodynamic property calculation
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    output: []
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  homepage_status: 0
  language:
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  lastUpdate: '2026-06-07T01:12:57.725718Z'
  license: MIT
  link:
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    type:
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    url: https://github.com/pepkio/pepkio-tm-annealing-temperature-calculator
  - note: null
    type:
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    url: https://www.pepkio.com/tools/tm-annealing-temperature-calculator
  - note: Python client on PyPI.
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  maturity: null
  name: Pepkio Tm Annealing Temperature Calculator
  operatingSystem: []
  otherID: []
  owner: pepkio
  publication: []
  relation: []
  toolType:
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  - Command-line tool
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  topic:
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    uri: http://edamontology.org/topic_0632
  - term: Molecular biology
    uri: http://edamontology.org/topic_3047
  - term: Laboratory techniques
    uri: http://edamontology.org/topic_3361
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  version:
  - 0.1.0
- accessibility: Open access
  additionDate: '2026-06-07T00:51:25.740335Z'
  biotoolsCURIE: biotools:pepkio-ph-buffer-recipe-calculator
  biotoolsID: pepkio-ph-buffer-recipe-calculator
  collectionID: []
  confidence_flag: null
  cost: Free of charge
  credit:
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    gridid: null
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    note: Pepkio develops software tools and bioinformatics solutions for life science
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    orcidid: null
    rorid: null
    typeEntity: Project
    typeRole:
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    url: https://www.pepkio.com/
  description: Computes weighed laboratory buffer recipes from target pH, concentration,
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    NaCl adjustment, gravimetric and titration routes, and stepwise protocols. A browser
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    and command-line tool submit the same parameters to the Pepkio Tools API for scripted
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  - note: null
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    - General
    url: https://www.pepkio.com/tools/ph-buffer-recipe-calculator
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    type:
    - User manual
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    note: Web calculator for bench buffer planning; Python library and CLI for API-backed
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  language:
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  lastUpdate: '2026-06-07T00:51:37.892323Z'
  license: MIT
  link:
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  toolType:
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  topic:
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  - term: Molecular biology
    uri: http://edamontology.org/topic_3047
  - term: Laboratory techniques
    uri: http://edamontology.org/topic_3361
  validated: 0
  version:
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- accessibility: Open access
  additionDate: '2026-06-06T10:17:59.613852Z'
  biotoolsCURIE: biotools:pepkio-pcr-master-mix-calculator
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  confidence_flag: null
  cost: Free of charge
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    orcidid: null
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  description: Plans PCR and qPCR master-mix reagent volumes from stock and final
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    recipe entry with printable bench sheets; a Python library and command-line tool
    submit the same parameters to the Pepkio Tools API for scripted and pipeline use.
    Calculator arithmetic is hosted remotely; the client transmits parameters and
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  documentation:
  - note: null
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    - General
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    note: Web calculator for bench planning; Python library and CLI for API-backed
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  language:
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  lastUpdate: '2026-06-06T10:17:59.615902Z'
  license: MIT
  link:
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  toolType:
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  - Command-line tool
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  topic:
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  - term: Laboratory techniques
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  validated: 0
  version:
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- accessibility: Open access
  additionDate: '2026-06-06T09:54:43.514157Z'
  biotoolsCURIE: biotools:pepkio-molarity-solution-calculator
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  credit:
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    orcidid: null
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    typeEntity: Project
    typeRole:
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  description: Computes laboratory solution preparation parameters—powder mass to
    weigh, stock and diluent volumes for single dilutions, and multi-step serial concentration
    tables—with correction for hydrated salts and supplier purity. A browser calculator
    supports interactive prep planning with saved recipes and shareable links; a Python
    client and command-line tool submit the same parameters to the Pepkio Tools API
    for scripted and pipeline use. Calculator arithmetic is hosted remotely; the client
    transmits parameters and returns structured protocol steps and shareable run identifiers.
  documentation:
  - note: null
    type:
    - General
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  - note: null
    type:
    - User manual
    url: https://github.com/pepkio/pepkio-molarity-solution-calculator
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    note: Web calculator for powder, dilution, and serial modes; Python library and
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    - term: Conversion
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  homepage_status: 0
  language:
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  lastUpdate: '2026-06-06T09:55:01.920855Z'
  license: MIT
  link:
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  - note: null
    type:
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    url: https://www.pepkio.com/tools/molarity-solution-calculator
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    url: https://pypi.org/project/pepkio-molarity-solution-calculator/
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  toolType:
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  topic:
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  - term: Laboratory techniques
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  - term: Biochemistry
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  validated: 0
  version:
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- accessibility: Open access
  additionDate: '2026-06-05T11:49:37.977245Z'
  biotoolsCURIE: biotools:pepkio-serial-dilution-planner
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  credit:
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    gridid: null
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    orcidid: null
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  description: Plans geometric serial dilution series for molecular biology and biochemistry
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    design; a Python client and command-line tool submit the same parameters to the
    Pepkio Tools API for scripted and pipeline use. Calculator arithmetic is hosted
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  documentation:
  - note: null
    type:
    - General
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  - note: null
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  function:
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    note: Web calculator for bench planning; Python library and CLI for API-backed
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    operation:
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    - term: Conversion
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  language:
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  lastUpdate: '2026-06-05T11:49:37.979211Z'
  license: MIT
  link:
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  - note: null
    type:
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  toolType:
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  - Library
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  topic:
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  - term: Laboratory techniques
    uri: http://edamontology.org/topic_3361
  - term: Biochemistry
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  validated: 0
  version:
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- accessibility: null
  additionDate: '2026-06-04T09:56:48.749854Z'
  biotoolsCURIE: biotools:NOVOPlasty
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  description: 'NOVOPlasty - The organelle assembler and heteroplasmy caller.


    NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular
    genomes..'
  documentation:
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    type:
    - General
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  function:
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    input:
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        term: Nucleic acid sequence
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      format:
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    note: null
    operation:
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    output:
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      format:
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  - cmd: null
    input: []
    note: null
    operation:
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      uri: http://edamontology.org/operation_3227
    output: []
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  homepage_status: 0
  language:
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  lastUpdate: '2026-06-04T09:56:48.751987Z'
  license: Other
  link:
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    type:
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  - note: null
    type:
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    url: https://github.com/ndierckx/NOVOPlasty/issues
  maturity: Mature
  name: NOVOPlasty
  operatingSystem: []
  otherID: []
  owner: aniehues
  publication:
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    metadata: null
    note: Primary publication for the tool.
    pmcid: PMC5389512
    pmid: '28204566'
    type:
    - Primary
    version: null
  - doi: 10.1093/nargab/lqz011
    metadata: null
    note: Primary publication for the heteroplasmy or variance calling option.
    pmcid: PMC7671380
    pmid: '33575563'
    type:
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    version: null
  relation: []
  toolType:
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  topic:
  - term: Sequence assembly
    uri: http://edamontology.org/topic_0196
  validated: 0
  version:
  - NOVOPlasty4.3.5
- accessibility: null
  additionDate: '2026-06-04T08:27:22.148216Z'
  biotoolsCURIE: biotools:spaln
  biotoolsID: spaln
  collectionID: []
  confidence_flag: null
  cost: null
  credit:
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    gridid: null
    name: Osamu Gotoh
    note: null
    orcidid: https://orcid.org/0009-0002-6750-1945
    rorid: null
    typeEntity: Person
    typeRole: []
    url: null
  description: Genome mapping and spliced alignment of cDNA or amino acid sequences
  documentation:
  - note: null
    type:
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    url: https://github.com/ogotoh/spaln
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  function:
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    input:
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    - data:
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    - data:
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      format: []
    note: null
    operation:
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    output:
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  homepage: https://github.com/ogotoh/spaln
  homepage_status: 0
  language:
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  - Perl
  - C++
  lastUpdate: '2026-06-04T08:27:22.150479Z'
  license: GPL-2.0
  link:
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  name: SPALN
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  publication:
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    metadata: null
    note: null
    pmcid: PMC13175633
    pmid: '42134803'
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  - doi: 10.1093/bioinformatics/btn460
    metadata: null
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    pmid: '18728043'
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    version: null
  - doi: 10.1093/nar/gks708
    metadata: null
    note: null
    pmcid: PMC3488211
    pmid: '22848105'
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  - doi: 10.1093/bioinformatics/16.3.190
    metadata: null
    note: null
    pmcid: null
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    type: []
    version: null
  - doi: 10.1093/bioinformatics/btae517
    metadata: null
    note: null
    pmcid: PMC11361809
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  - doi: 10.1007/978-1-0716-1036-7_5
    metadata: null
    note: null
    pmcid: null
    pmid: '33289887'
    type: []
    version: null
  - doi: 10.1093/bioinformatics/btl067
    metadata: null
    note: null
    pmcid: null
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  toolType:
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  topic:
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  validated: 0
  version:
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- accessibility: null
  additionDate: '2026-06-04T08:08:16.771951Z'
  biotoolsCURIE: biotools:screen_assembly
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    note: null
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  description: 'Screen a bacterial assembly (contigs/CDS or proteins) for nucleotide
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    Pipeline that screens for presence of genes of interest (GOI) in bacterial assemblies.
    Generates multiple CSVs and plots that describe which genes are present and how
    variable their sequence is. Can use DNA or protein query sequences (GOIs) and
    DNA contigs/fastas or protein fastas as database (db) to search in.'
  documentation:
  - note: null
    type:
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    url: https://github.com/shimbalama/screen_assembly/wiki
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  function:
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    input:
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      format:
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    note: null
    operation:
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      uri: http://edamontology.org/operation_2403
    output:
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        uri: http://edamontology.org/data_2976
      format: []
    - data:
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      format: []
  homepage: https://github.com/shimbalama/screen_assembly
  homepage_status: 0
  language:
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  lastUpdate: '2026-06-04T08:08:16.774426Z'
  license: MIT
  link:
  - note: null
    type:
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    url: https://github.com/shimbalama/screen_assembly
  maturity: Mature
  name: screen_assembly
  operatingSystem: []
  otherID: []
  owner: aniehues
  publication:
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    metadata: null
    note: null
    pmcid: PMC6650292
    pmid: '31133745'
    type:
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    version: null
  relation: []
  toolType:
  - Script
  - Command-line tool
  topic:
  - term: Sequence assembly
    uri: http://edamontology.org/topic_0196
  validated: 0
  version:
  - v1
- accessibility: null
  additionDate: '2026-06-04T07:54:19.689100Z'
  biotoolsCURIE: biotools:LongTR
  biotoolsID: LongTR
  collectionID: []
  confidence_flag: null
  cost: null
  credit: []
  description: Tandem repeat genotyping with long reads, being a modified version
    of HipSTR.
  documentation: []
  download: []
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  elixir_badge: 0
  function:
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    input:
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  description: Membrane Protein-Lipid Interaction Database. A large-scale experimentally
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  description: This module provides a command line tool to validate DICOM SEG files
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- accessibility: Open access (with restrictions)
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    fully agnostic to metadata changes, consider using [https://bio.tools/image_duplicate_check_tool]'
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  description: 'In silico derivatization for GC.


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  additionDate: '2026-05-19T13:51:52.767136Z'
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  confidence_flag: tool
  cost: Free of charge
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  description: Minigraph is a sequence-to-graph mapper and graph constructor. For
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