{"name":"NMRProcFlow","description":"An interactive 1D NMR spectra processing tool dedicated to metabolomics. This open source software provides a complete set of tools for processing and visualization of 1D NMR data, the whole within an interactive interface based on a spectra visualization.","homepage":"http://nmrprocflow.org/","biotoolsID":"nmrprocflow","biotoolsCURIE":"biotools:nmrprocflow","version":["1.4"],"otherID":[],"relation":[],"function":[{"operation":[{"uri":"http://edamontology.org/operation_3799","term":"Quantification"},{"uri":"http://edamontology.org/operation_3214","term":"Spectral analysis"},{"uri":"http://edamontology.org/operation_0337","term":"Visualisation"},{"uri":"http://edamontology.org/operation_2409","term":"Data handling"},{"uri":"http://edamontology.org/operation_2928","term":"Alignment"}],"input":[{"data":{"uri":"http://edamontology.org/data_3488","term":"NMR spectrum"},"format":[]}],"output":[{"data":{"uri":"http://edamontology.org/data_2082","term":"Matrix"},"format":[]}],"note":null,"cmd":null}],"toolType":["Web application","Desktop application"],"topic":[{"uri":"http://edamontology.org/topic_3172","term":"Metabolomics"}],"operatingSystem":["Linux","Windows","Mac"],"language":["R","PHP","JavaScript"],"license":"GPL-3.0","collectionID":[],"maturity":"Mature","cost":"Free of charge","accessibility":"Open access","elixirPlatform":[],"elixirNode":[],"elixirCommunity":[],"link":[],"download":[{"url":"https://nmrprocflow.org/c_download","type":"Downloads page","note":"There are three ways to install NMRProcFlow, depending on the type of installation : Desktop PC, Linux Server, CLoud","version":"1.4"},{"url":"https://github.com/INRA/NMRProcFlow","type":"Source code","note":null,"version":"1.4"},{"url":"https://github.com/INRA/Rnmr1D","type":"Software package","note":"Rnmr1D package : Rnmr1D is the main module in the NMRProcFlow web application (http://nmrprocflow.org) concerning the NMR spectra processing.","version":"1.4"}],"documentation":[{"url":"https://nmrprocflow.org","type":["User manual"],"note":null}],"publication":[{"doi":"10.1007/s11306-017-1178-y","pmid":"28261014","pmcid":"PMC5313591","type":["Primary"],"version":null,"note":null,"metadata":{"title":"NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics","abstract":"Introduction: Concerning NMR-based metabolomics, 1D spectra processing often requires an expert eye for disentangling the intertwined peaks. Objectives: The objective of NMRProcFlow is to assist the expert in this task in the best way without requirement of programming skills. Methods: NMRProcFlow was developed to be a graphical and interactive 1D NMR (1H & 13C) spectra processing tool. Results: NMRProcFlow (http://nmrprocflow.org), dedicated to metabolic fingerprinting and targeted metabolomics, covers all spectra processing steps including baseline correction, chemical shift calibration and alignment. Conclusion: Biologists and NMR spectroscopists can easily interact and develop synergies by visualizing the NMR spectra along with their corresponding experimental-factor levels, thus setting a bridge between experimental design and subsequent statistical analyses.","date":"2017-04-01T00:00:00Z","citationCount":140,"authors":[{"name":"Jacob D."},{"name":"Deborde C."},{"name":"Lefebvre M."},{"name":"Maucourt M."},{"name":"Moing A."}],"journal":"Metabolomics"}}],"credit":[{"name":"Daniel Jacob","email":"daniel.jacob@inrae.fr","url":null,"orcidid":"https://orcid.org/0000-0002-6687-7169","gridid":null,"rorid":null,"fundrefid":null,"typeEntity":"Person","typeRole":["Primary contact"],"note":null}],"owner":"djacob","additionDate":"2017-04-13T13:56:19Z","lastUpdate":"2024-11-24T20:21:11.101420Z","editPermission":{"type":"private","authors":[]},"validated":1,"homepage_status":0,"elixir_badge":0,"confidence_flag":null}