List all resources, or create a new resource.

GET /api/t/?publicationType=Primary
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 4945,
    "previous": null,
    "list": [
        {
            "collectionID": [
                "BLAST",
                "ChEMBL Tools",
                "ChEMBL",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                },
                {
                    "term": "Small molecules",
                    "uri": "http://edamontology.org/topic_0154"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gkr777",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "ChEMBL: A large-scale bioactivity database for drug discovery",
                        "abstract": "ChEMBL is an Open Data database containing binding, functional and ADMET information for a large number of drug-like bioactive compounds. These data are manually abstracted from the primary published literature on a regular basis, then further curated and standardized to maximize their quality and utility across a wide range of chemical biology and drug-discovery research problems. Currently, the database contains 5.4 million bioactivity measurements for more than 1 million compounds and 5200 protein targets. Access is available through a web-based interface, data downloads and web services at: https://www.ebi.ac.uk/ chembldb. © The Author(s) 2011. Published by Oxford University Press.",
                        "citationCount": 1583,
                        "authors": [
                            {
                                "name": "Gaulton A."
                            },
                            {
                                "name": "Bellis L.J."
                            },
                            {
                                "name": "Bento A.P."
                            },
                            {
                                "name": "Chambers J."
                            },
                            {
                                "name": "Davies M."
                            },
                            {
                                "name": "Hersey A."
                            },
                            {
                                "name": "Light Y."
                            },
                            {
                                "name": "McGlinchey S."
                            },
                            {
                                "name": "Michalovich D."
                            },
                            {
                                "name": "Al-Lazikani B."
                            },
                            {
                                "name": "Overington J.P."
                            }
                        ],
                        "date": "2012-01-01T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "ChEMBL Team",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "chembl-help@ebi.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Mark Davies",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "mdavies@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:chembl_biologicals_blast_search",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "https://www.ebi.ac.uk/chembl/compound",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": [
                                {
                                    "term": "FASTA",
                                    "uri": "http://edamontology.org/format_1929"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Small molecule report",
                                "uri": "http://edamontology.org/data_0962"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:05:23.452417Z",
            "otherID": [],
            "description": "BLAST search against biological molecules (e.g. mAbs) stored in ChEMBL database.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "chembl_biologicals_blast_search",
            "additionDate": "2015-01-29T15:44:12Z",
            "name": "ChEMBL API",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "https://www.ebi.ac.uk/chembl/compound",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "ChEMBL Tools",
                "ChEMBL",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                },
                {
                    "term": "Small molecules",
                    "uri": "http://edamontology.org/topic_0154"
                },
                {
                    "term": "Cheminformatics",
                    "uri": "http://edamontology.org/topic_2258"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gkw1074",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "The ChEMBL database in 2017",
                        "abstract": "© 2016 The Author(s).ChEMBL is an open large-scale bioactivity database (https://www.ebi.ac.uk/chembl), previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since then, alongside the continued extraction of data from the medicinal chemistry literature, new sources of bioactivity data have also been added to the database. These include: deposited data sets from neglected disease screening; crop protection data; drug metabolism and disposition data and bioactivity data from patents. A number of improvements and new features have also been incorporated. These include the annotation of assays and targets using ontologies, the inclusion of targets and indications for clinical candidates, addition of metabolic pathways for drugs and calculation of structural alerts. The ChEMBL data can be accessed via a web-interface, RDF distribution, data downloads and RESTful web-services.",
                        "citationCount": 230,
                        "authors": [
                            {
                                "name": "Gaulton A."
                            },
                            {
                                "name": "Hersey A."
                            },
                            {
                                "name": "Nowotka M.-L."
                            },
                            {
                                "name": "Patricia Bento A."
                            },
                            {
                                "name": "Chambers J."
                            },
                            {
                                "name": "Mendez D."
                            },
                            {
                                "name": "Mutowo P."
                            },
                            {
                                "name": "Atkinson F."
                            },
                            {
                                "name": "Bellis L.J."
                            },
                            {
                                "name": "Cibrian-Uhalte E."
                            },
                            {
                                "name": "Davies M."
                            },
                            {
                                "name": "Dedman N."
                            },
                            {
                                "name": "Karlsson A."
                            },
                            {
                                "name": "Magarinos M.P."
                            },
                            {
                                "name": "Overington J.P."
                            },
                            {
                                "name": "Papadatos G."
                            },
                            {
                                "name": "Smit I."
                            },
                            {
                                "name": "Leach A.R."
                            }
                        ],
                        "date": "2017-01-01T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "ChEMBL Team",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "chembl-help@ebi.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Mark Davies",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "mdavies@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:chembl_blast_search",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "https://www.ebi.ac.uk/chembl/target",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": [
                                {
                                    "term": "FASTA",
                                    "uri": "http://edamontology.org/format_1929"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Small molecule report",
                                "uri": "http://edamontology.org/data_0962"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:04:17.694966Z",
            "otherID": [],
            "description": "BLAST search against protein targets stored in ChEMBL database.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "chembl_blast_search",
            "additionDate": "2015-01-29T15:44:15Z",
            "name": "ChEMBL BLAST Search",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "https://www.ebi.ac.uk/chembl/target",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "denbi-gcbn",
                "de.NBI",
                "BLAST"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Genetics",
                    "uri": "http://edamontology.org/topic_3053"
                }
            ],
            "owner": "ipk",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.3835/plantgenome2015.06.0038",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "TransPLANT resources for triticeae genomic data",
                        "abstract": "© Crop Science Society of America.The genome sequences of many important Triticeae species, including bread wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.), remained uncharacterized for a long time because their high repeat content, large sizes, and polyploidy. As a result of improvements in sequencing technologies and novel analyses strategies, several of these have recently been deciphered. These efforts have generated new insights into Triticeae biology and genome organization and have important implications for downstream usage by breeders, experimental biologists, and comparative genomicists. transPLANT (http://www.transplantdb.eu) is an EU-funded project aimed at constructing hardware, software, and data infrastructure for genome-scale research in the life sciences. Since the Triticeae data are intrinsically complex, heterogenous, and distributed, the transPLANT consortium has undertaken efforts to develop common data formats and tools that enable the exchange and integration of data from distributed resources. Here we present an overview of the individual Triticeae genome resources hosted by transPLANT partners, introduce the objectives of transPLANT, and outline common developments and interfaces supporting integrated data access.",
                        "citationCount": 4,
                        "authors": [
                            {
                                "name": "Spannagl M."
                            },
                            {
                                "name": "Alaux M."
                            },
                            {
                                "name": "Lange M."
                            },
                            {
                                "name": "Bolser D.M."
                            },
                            {
                                "name": "Bader K.C."
                            },
                            {
                                "name": "Letellier T."
                            },
                            {
                                "name": "Kimmel E."
                            },
                            {
                                "name": "Flores R."
                            },
                            {
                                "name": "Pommier C."
                            },
                            {
                                "name": "Kerhornou A."
                            },
                            {
                                "name": "Walts B."
                            },
                            {
                                "name": "Nussbaumer T."
                            },
                            {
                                "name": "Grabmuller C."
                            },
                            {
                                "name": "Chen J."
                            },
                            {
                                "name": "Colmsee C."
                            },
                            {
                                "name": "Beier S."
                            },
                            {
                                "name": "Mascher M."
                            },
                            {
                                "name": "Schmutzer T."
                            },
                            {
                                "name": "Arend D."
                            },
                            {
                                "name": "Thanki A."
                            },
                            {
                                "name": "Ramirez-Gonzalez R."
                            },
                            {
                                "name": "Ayling M."
                            },
                            {
                                "name": "Ayling S."
                            },
                            {
                                "name": "Caccamo M."
                            },
                            {
                                "name": "Mayer K.F.X."
                            },
                            {
                                "name": "Scholz U."
                            },
                            {
                                "name": "Steinbach D."
                            },
                            {
                                "name": "Quesneville H."
                            },
                            {
                                "name": "Kersey P.J."
                            }
                        ],
                        "date": "2016-03-01T00:00:00Z",
                        "journal": "Plant Genome"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "ipk",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Maintainer"
                    ],
                    "name": "Dr. Uwe Scholz",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": null,
                    "email": "scholz@ipk-gatersleben.de"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Dr. Uwe Scholz",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "scholz@ipk-gatersleben.de"
                }
            ],
            "biotoolsCURIE": "biotools:ipk_blast",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "http://webblast.ipk-gatersleben.de",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Sequence",
                                "uri": "http://edamontology.org/data_2044"
                            },
                            "format": [
                                {
                                    "term": "FASTA-like",
                                    "uri": "http://edamontology.org/format_2546"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence alignment",
                                "uri": "http://edamontology.org/data_0863"
                            },
                            "format": [
                                {
                                    "term": "Alignment format",
                                    "uri": "http://edamontology.org/format_1921"
                                }
                            ]
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:03:01.738300Z",
            "otherID": [],
            "description": "A homology search against the current barley sequences resources is provided. The complete sequences data set comprises the whole genome shotgun assemblies of the cultivars Morex, Barke and Bowman as well as the high and low confidence gene sets. The newest POPSEQ anchoring data is integrated. Furthermore, the barley exome capture targets are provided. Additionally, resources like bacterial artificial chromosome assemblies, BAC end sequences and full length cDNAs are included.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "group",
                "authors": [
                    "ipk"
                ]
            },
            "language": [
                "Java"
            ],
            "link": [],
            "biotoolsID": "ipk_blast",
            "additionDate": "2016-04-22T09:22:48Z",
            "name": "IPK BLAST Server",
            "license": null,
            "documentation": [
                {
                    "url": "http://dx.doi.org/10.3835/plantgenome2015.06.0038",
                    "note": null,
                    "type": "Citation instructions"
                },
                {
                    "url": "http://webblast.ipk-gatersleben.de/barley_ibsc/docs/blast_databases.html",
                    "note": null,
                    "type": "General"
                },
                {
                    "url": "http://webblast.ipk-gatersleben.de/ryeselect/docs/blast_databases.html",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "ChEMBL Tools",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                },
                {
                    "term": "Membrane and lipoproteins",
                    "uri": "http://edamontology.org/topic_0820"
                },
                {
                    "term": "Cheminformatics",
                    "uri": "http://edamontology.org/topic_2258"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/bioinformatics/btv010",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "ADME SARfari: Comparative genomics of drug metabolizing systems",
                        "abstract": "© The Author 2015. Published by Oxford University Press. Motivation: ADME SARfari is a freely available web resource that enables comparative analyses of drug-disposition genes. It does so by integrating a number of publicly available data sources, which have subsequently been used to build data mining services, predictive tools and visualizations for drug metabolism researchers. The data include the interactions of small molecules with ADME (absorption, distribution, metabolism and excretion) proteins responsible for the metabolism and transport of molecules; available pharmacokinetic (PK) data; protein sequences of ADME-related molecular targets for pre-clinical model species and human; alignments of the orthologues including information on known SNPs (Single Nucleotide Polymorphism) and information on the tissue distribution of these proteins. In addition, in silico models have been developed, which enable users to predict which ADME relevant protein targets a novel compound is likely to interact with.",
                        "citationCount": 9,
                        "authors": [
                            {
                                "name": "Davies M."
                            },
                            {
                                "name": "Dedman N."
                            },
                            {
                                "name": "Hersey A."
                            },
                            {
                                "name": "Papadatos G."
                            },
                            {
                                "name": "Hall M.D."
                            },
                            {
                                "name": "Cucurull-Sanchez L."
                            },
                            {
                                "name": "Jeffrey P."
                            },
                            {
                                "name": "Hasan S."
                            },
                            {
                                "name": "Eddershaw P.J."
                            },
                            {
                                "name": "Overington J.P."
                            }
                        ],
                        "date": "2015-01-01T00:00:00Z",
                        "journal": "Bioinformatics"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "ChEMBL Team",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "chembl-help@ebi.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Mark Davies",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "mdavies@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:gpcr_sarfari_blast_search",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "https://www.ebi.ac.uk/chembl/sarfari/gpcrsarfari/protein",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": [
                                {
                                    "term": "FASTA",
                                    "uri": "http://edamontology.org/format_1929"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:02:39.543382Z",
            "otherID": [],
            "description": "BLAST search of against GPCR domains stored in GPCR SARfari.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "gpcr_sarfari_blast_search",
            "additionDate": "2015-01-29T15:44:07Z",
            "name": "GPCR SARfari  BLAST Search",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "https://www.ebi.ac.uk/chembl/sarfari/gpcrsarfari/protein",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "Ensembl Tools",
                "EBI tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1016/S0022-2836(05)80360-2",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "Basic local alignment search tool",
                        "abstract": "A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straight-forward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity. © 1990, Academic Press Limited. All rights reserved.",
                        "citationCount": 55767,
                        "authors": [
                            {
                                "name": "Altschul S.F."
                            },
                            {
                                "name": "Gish W."
                            },
                            {
                                "name": "Miller W."
                            },
                            {
                                "name": "Myers E.W."
                            },
                            {
                                "name": "Lipman D.J."
                            }
                        ],
                        "date": "1990-01-01T00:00:00Z",
                        "journal": "Journal of Molecular Biology"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": "http://www.ensembl.org/Help/Contact",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Andrew Yates",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "ayates@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:ensembl_sequence_search_blast",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "http://www.ensembl.org/Multi/blastview",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Sequence",
                                "uri": "http://edamontology.org/data_2044"
                            },
                            "format": []
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": [
                                {
                                    "term": "HTML",
                                    "uri": "http://edamontology.org/format_2331"
                                }
                            ]
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:02:26.989789Z",
            "otherID": [],
            "description": "Sequence similarity searching against genomic, cds, cdna and protein sequence. BLAT is available for genomic sequence and WU-Blast is used for BLASTing.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [
                {
                    "url": "http://www.ensembl.org/Help/Contact",
                    "note": null,
                    "type": "Helpdesk"
                }
            ],
            "biotoolsID": "ensembl_sequence_search_blast",
            "additionDate": "2015-01-29T15:47:55Z",
            "name": "Ensembl Sequence Search BLAST",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "http://www.ensembl.org/Multi/blastview",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "UniProt Tools",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gku989",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "UniProt: A hub for protein information",
                        "abstract": "© The Author(s) 2014.UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.",
                        "citationCount": 2332,
                        "authors": [
                            {
                                "name": "Bateman A."
                            },
                            {
                                "name": "Martin M.J."
                            },
                            {
                                "name": "O'Donovan C."
                            },
                            {
                                "name": "Magrane M."
                            },
                            {
                                "name": "Apweiler R."
                            },
                            {
                                "name": "Alpi E."
                            },
                            {
                                "name": "Antunes R."
                            },
                            {
                                "name": "Arganiska J."
                            },
                            {
                                "name": "Bely B."
                            },
                            {
                                "name": "Bingley M."
                            },
                            {
                                "name": "Bonilla C."
                            },
                            {
                                "name": "Britto R."
                            },
                            {
                                "name": "Bursteinas B."
                            },
                            {
                                "name": "Chavali G."
                            },
                            {
                                "name": "Cibrian-Uhalte E."
                            },
                            {
                                "name": "Da Silva A."
                            },
                            {
                                "name": "De Giorgi M."
                            },
                            {
                                "name": "Dogan T."
                            },
                            {
                                "name": "Fazzini F."
                            },
                            {
                                "name": "Gane P."
                            },
                            {
                                "name": "Castro L.G."
                            },
                            {
                                "name": "Garmiri P."
                            },
                            {
                                "name": "Hatton-Ellis E."
                            },
                            {
                                "name": "Hieta R."
                            },
                            {
                                "name": "Huntley R."
                            },
                            {
                                "name": "Legge D."
                            },
                            {
                                "name": "Liu W."
                            },
                            {
                                "name": "Luo J."
                            },
                            {
                                "name": "Macdougall A."
                            },
                            {
                                "name": "Mutowo P."
                            },
                            {
                                "name": "Nightingale A."
                            },
                            {
                                "name": "Orchard S."
                            },
                            {
                                "name": "Pichler K."
                            },
                            {
                                "name": "Poggioli D."
                            },
                            {
                                "name": "Pundir S."
                            },
                            {
                                "name": "Pureza L."
                            },
                            {
                                "name": "Qi G."
                            },
                            {
                                "name": "Rosanoff S."
                            },
                            {
                                "name": "Saidi R."
                            },
                            {
                                "name": "Sawford T."
                            },
                            {
                                "name": "Shypitsyna A."
                            },
                            {
                                "name": "Turner E."
                            },
                            {
                                "name": "Volynkin V."
                            },
                            {
                                "name": "Wardell T."
                            },
                            {
                                "name": "Watkins X."
                            },
                            {
                                "name": "Zellner H."
                            },
                            {
                                "name": "Cowley A."
                            },
                            {
                                "name": "Figueira L."
                            },
                            {
                                "name": "Li W."
                            },
                            {
                                "name": "McWilliam H."
                            },
                            {
                                "name": "Lopez R."
                            },
                            {
                                "name": "Xenarios I."
                            },
                            {
                                "name": "Bougueleret L."
                            },
                            {
                                "name": "Bridge A."
                            },
                            {
                                "name": "Poux S."
                            },
                            {
                                "name": "Redaschi N."
                            },
                            {
                                "name": "Aimo L."
                            },
                            {
                                "name": "Argoud-Puy G."
                            },
                            {
                                "name": "Auchincloss A."
                            },
                            {
                                "name": "Axelsen K."
                            },
                            {
                                "name": "Bansal P."
                            },
                            {
                                "name": "Baratin D."
                            },
                            {
                                "name": "Blatter M.-C."
                            },
                            {
                                "name": "Boeckmann B."
                            },
                            {
                                "name": "Bolleman J."
                            },
                            {
                                "name": "Boutet E."
                            },
                            {
                                "name": "Breuza L."
                            },
                            {
                                "name": "Casal-Casas C."
                            },
                            {
                                "name": "De Castro E."
                            },
                            {
                                "name": "Coudert E."
                            },
                            {
                                "name": "Cuche B."
                            },
                            {
                                "name": "Doche M."
                            },
                            {
                                "name": "Dornevil D."
                            },
                            {
                                "name": "Duvaud S."
                            },
                            {
                                "name": "Estreicher A."
                            },
                            {
                                "name": "Famiglietti L."
                            },
                            {
                                "name": "Feuermann M."
                            },
                            {
                                "name": "Gasteiger E."
                            },
                            {
                                "name": "Gehant S."
                            },
                            {
                                "name": "Gerritsen V."
                            },
                            {
                                "name": "Gos A."
                            },
                            {
                                "name": "Gruaz-Gumowski N."
                            },
                            {
                                "name": "Hinz U."
                            },
                            {
                                "name": "Hulo C."
                            },
                            {
                                "name": "Jungo F."
                            },
                            {
                                "name": "Keller G."
                            },
                            {
                                "name": "Lara V."
                            },
                            {
                                "name": "Lemercier P."
                            },
                            {
                                "name": "Lieberherr D."
                            },
                            {
                                "name": "Lombardot T."
                            },
                            {
                                "name": "Martin X."
                            },
                            {
                                "name": "Masson P."
                            },
                            {
                                "name": "Morgat A."
                            },
                            {
                                "name": "Neto T."
                            },
                            {
                                "name": "Nouspikel N."
                            },
                            {
                                "name": "Paesano S."
                            },
                            {
                                "name": "Pedruzzi I."
                            },
                            {
                                "name": "Pilbout S."
                            },
                            {
                                "name": "Pozzato M."
                            },
                            {
                                "name": "Pruess M."
                            },
                            {
                                "name": "Rivoire C."
                            },
                            {
                                "name": "Roechert B."
                            },
                            {
                                "name": "Schneider M."
                            },
                            {
                                "name": "Sigrist C."
                            },
                            {
                                "name": "Sonesson K."
                            },
                            {
                                "name": "Staehli S."
                            },
                            {
                                "name": "Stutz A."
                            },
                            {
                                "name": "Sundaram S."
                            },
                            {
                                "name": "Tognolli M."
                            },
                            {
                                "name": "Verbregue L."
                            },
                            {
                                "name": "Veuthey A.L."
                            },
                            {
                                "name": "Wu C.H."
                            },
                            {
                                "name": "Arighi C.N."
                            },
                            {
                                "name": "Arminski L."
                            },
                            {
                                "name": "Chen C."
                            },
                            {
                                "name": "Chen Y."
                            },
                            {
                                "name": "Garavelli J.S."
                            },
                            {
                                "name": "Huang H."
                            },
                            {
                                "name": "Laiho K."
                            },
                            {
                                "name": "McGarvey P."
                            },
                            {
                                "name": "Natale D.A."
                            },
                            {
                                "name": "Suzek B.E."
                            },
                            {
                                "name": "Vinayaka C.R."
                            },
                            {
                                "name": "Wang Q."
                            },
                            {
                                "name": "Wang Y."
                            },
                            {
                                "name": "Yeh L.-S."
                            },
                            {
                                "name": "Yerramalla M.S."
                            },
                            {
                                "name": "Zhang J."
                            }
                        ],
                        "date": "2015-01-28T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "Xavier Watkins",
                    "url": "https://www.ebi.ac.uk/about/people/xavier-watkins",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "UniProt Consortium",
                    "url": "http://www.uniprot.org/help/about",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "NCBI",
                    "url": "https://www.ncbi.nlm.nih.gov/",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": "http://www.ebi.ac.uk/",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": "http://www.uniprot.org/contact",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Xavier Watkins",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "watkins@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:uniprot_blast",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "http://www.uniprot.org/blast/",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": []
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        },
                        {
                            "term": "Sequence alignment",
                            "uri": "http://edamontology.org/operation_0292"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:02:15.144582Z",
            "otherID": [],
            "description": "Search UniProt sequences with BLAST.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [
                {
                    "url": "http://www.uniprot.org/contact",
                    "note": null,
                    "type": "Helpdesk"
                }
            ],
            "biotoolsID": "uniprot_blast",
            "additionDate": "2015-01-29T15:47:56Z",
            "name": "UniProt BLAST",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "http://www.uniprot.org/help/sequence-searches",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "ChEMBL Tools",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                },
                {
                    "term": "Model organisms",
                    "uri": "http://edamontology.org/topic_0621"
                },
                {
                    "term": "Cheminformatics",
                    "uri": "http://edamontology.org/topic_2258"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gkr777",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "ChEMBL: A large-scale bioactivity database for drug discovery",
                        "abstract": "ChEMBL is an Open Data database containing binding, functional and ADMET information for a large number of drug-like bioactive compounds. These data are manually abstracted from the primary published literature on a regular basis, then further curated and standardized to maximize their quality and utility across a wide range of chemical biology and drug-discovery research problems. Currently, the database contains 5.4 million bioactivity measurements for more than 1 million compounds and 5200 protein targets. Access is available through a web-based interface, data downloads and web services at: https://www.ebi.ac.uk/ chembldb. © The Author(s) 2011. Published by Oxford University Press.",
                        "citationCount": 1583,
                        "authors": [
                            {
                                "name": "Gaulton A."
                            },
                            {
                                "name": "Bellis L.J."
                            },
                            {
                                "name": "Bento A.P."
                            },
                            {
                                "name": "Chambers J."
                            },
                            {
                                "name": "Davies M."
                            },
                            {
                                "name": "Hersey A."
                            },
                            {
                                "name": "Light Y."
                            },
                            {
                                "name": "McGlinchey S."
                            },
                            {
                                "name": "Michalovich D."
                            },
                            {
                                "name": "Al-Lazikani B."
                            },
                            {
                                "name": "Overington J.P."
                            }
                        ],
                        "date": "2012-01-01T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "ChEMBL Team",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "chembl-help@ebi.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Mark Davies",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "mdavies@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:malaria_data_blast_search",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "https://www.ebi.ac.uk/chembl/malaria/target",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": [
                                {
                                    "term": "FASTA",
                                    "uri": "http://edamontology.org/format_1929"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:01:59.552666Z",
            "otherID": [],
            "description": "BLAST search against protein targets stored in Malaria Data database.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "malaria_data_blast_search",
            "additionDate": "2015-01-29T15:44:14Z",
            "name": "Malaria Data BLAST Search",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "https://www.ebi.ac.uk/chembl/malaria/target",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "ChEMBL Tools",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gkr777",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "ChEMBL: A large-scale bioactivity database for drug discovery",
                        "abstract": "ChEMBL is an Open Data database containing binding, functional and ADMET information for a large number of drug-like bioactive compounds. These data are manually abstracted from the primary published literature on a regular basis, then further curated and standardized to maximize their quality and utility across a wide range of chemical biology and drug-discovery research problems. Currently, the database contains 5.4 million bioactivity measurements for more than 1 million compounds and 5200 protein targets. Access is available through a web-based interface, data downloads and web services at: https://www.ebi.ac.uk/ chembldb. © The Author(s) 2011. Published by Oxford University Press.",
                        "citationCount": 1583,
                        "authors": [
                            {
                                "name": "Gaulton A."
                            },
                            {
                                "name": "Bellis L.J."
                            },
                            {
                                "name": "Bento A.P."
                            },
                            {
                                "name": "Chambers J."
                            },
                            {
                                "name": "Davies M."
                            },
                            {
                                "name": "Hersey A."
                            },
                            {
                                "name": "Light Y."
                            },
                            {
                                "name": "McGlinchey S."
                            },
                            {
                                "name": "Michalovich D."
                            },
                            {
                                "name": "Al-Lazikani B."
                            },
                            {
                                "name": "Overington J.P."
                            }
                        ],
                        "date": "2012-01-01T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "ChEMBL Team",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "chembl-help@ebi.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "Mark Davies",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "mdavies@ebi.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:kinase_sarfari_blast_search",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "https://www.ebi.ac.uk/chembl/sarfari/kinasesarfari/protein",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": [
                                {
                                    "term": "FASTA",
                                    "uri": "http://edamontology.org/format_1929"
                                }
                            ]
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:01:46.075876Z",
            "otherID": [],
            "description": "BLAST search against Kinase domains stored in Kinase SARfari.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "kinase_sarfari_blast_search",
            "additionDate": "2015-01-29T15:44:10Z",
            "name": "Kinase SARfari  BLAST Search",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "https://www.ebi.ac.uk/chembl/sarfari/kinasesarfari/protein",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST",
                "EBI Tools"
            ],
            "accessibility": [],
            "topic": [
                {
                    "term": "Sequence analysis",
                    "uri": "http://edamontology.org/topic_0080"
                },
                {
                    "term": "Enzymes",
                    "uri": "http://edamontology.org/topic_0821"
                }
            ],
            "owner": "EMBL-EBI",
            "cost": null,
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1093/nar/gkv1118",
                    "version": null,
                    "pmid": null,
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors",
                        "abstract": "© The Author(s) 2015. The MEROPS database (http://merops.sanger.ac.UK) is an integrated source of information about peptidases, their substrates and inhibitors, which are of great relevance to biology, medicine and biotechnology. The hierarchical classification of the database is as follows: homologous sets of sequences are grouped into a protein species; protein species are grouped into a family; families are grouped into clans. There is a type example for each protein species (known as a 'holotype'), family and clan, and each protein species, family and clan has its own unique identifier. Pages to show the involvement of peptidases and peptidase inhibitors in biological pathways have been created. Each page shows the peptidases and peptidase inhibitors involved in the pathway, along with the known substrate cleavages and peptidase-inhibitor interactions, and a link to the KEGG database of biological pathways. Links have also been established with the IUPHAR Guide to Pharmacology. A new service has been set up to allow the submission of identified substrate cleavages so that conservation of the cleavage site can be assessed. This should help establish whether or not a cleavage site is physiologically relevant on the basis that such a cleavage site is likely to be conserved.",
                        "citationCount": 315,
                        "authors": [
                            {
                                "name": "Rawlings N.D."
                            },
                            {
                                "name": "Barrett A.J."
                            },
                            {
                                "name": "Finn R."
                            }
                        ],
                        "date": "2016-01-01T00:00:00Z",
                        "journal": "Nucleic Acids Research"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "Neil Rawlings",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "MEROPS group",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                },
                {
                    "typeRole": [
                        "Contributor"
                    ],
                    "name": "NCBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": null,
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "EMBL-EBI",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Provider"
                    ],
                    "name": "Sanger Institute",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Institute",
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "merops@sanger.ac.uk"
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": "MEROPS group",
                    "url": null,
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": "merops@sanger.ac.uk"
                }
            ],
            "biotoolsCURIE": "biotools:merops_blast",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1"
            ],
            "elixir_badge": 0,
            "homepage": "http://merops.sanger.ac.uk/cgi-bin/blast/submitblast/merops/advanced",
            "function": [
                {
                    "note": "The output includes protein similarity matches with active site residues annotated",
                    "input": [
                        {
                            "data": {
                                "term": "Protein sequence",
                                "uri": "http://edamontology.org/data_2976"
                            },
                            "format": []
                        },
                        {
                            "data": {
                                "term": "DNA sequence",
                                "uri": "http://edamontology.org/data_3494"
                            },
                            "format": []
                        }
                    ],
                    "operation": [
                        {
                            "term": "Sequence similarity search",
                            "uri": "http://edamontology.org/operation_0346"
                        }
                    ],
                    "cmd": null,
                    "output": [
                        {
                            "data": {
                                "term": "Protein features",
                                "uri": "http://edamontology.org/data_1277"
                            },
                            "format": []
                        },
                        {
                            "data": {
                                "term": "Sequence search results",
                                "uri": "http://edamontology.org/data_0857"
                            },
                            "format": []
                        }
                    ]
                }
            ],
            "lastUpdate": "2019-07-22T13:01:32.224189Z",
            "otherID": [],
            "description": "Search MEROPS sequences with BLAST.",
            "toolType": [
                "Web application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [],
            "link": [],
            "biotoolsID": "merops_blast",
            "additionDate": "2015-01-29T15:47:47Z",
            "name": "MEROPS Blast",
            "license": null,
            "documentation": [
                {
                    "url": "http://www.ebi.ac.uk/about/terms-of-use",
                    "note": null,
                    "type": "Terms of use"
                },
                {
                    "url": "http://merops.sanger.ac.uk/about/special_features.shtml#BLAST",
                    "note": null,
                    "type": "General"
                }
            ],
            "maturity": null,
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        },
        {
            "collectionID": [
                "BLAST utility"
            ],
            "accessibility": [
                "Open access"
            ],
            "topic": [
                {
                    "term": "Data management",
                    "uri": "http://edamontology.org/topic_3071"
                },
                {
                    "term": "Bioinformatics",
                    "uri": "http://edamontology.org/topic_0091"
                }
            ],
            "owner": "hlfernandez@uvigo.es",
            "cost": "Free of charge",
            "relation": [
                {
                    "type": "uses",
                    "biotoolsID": "blast"
                }
            ],
            "download": [
                {
                    "url": "https://github.com/sing-group/BDBM/",
                    "note": null,
                    "version": null,
                    "type": "Source code"
                },
                {
                    "url": "http://www.sing-group.org/BDBM/download.html",
                    "note": null,
                    "version": null,
                    "type": "Binaries"
                }
            ],
            "validated": 0,
            "publication": [
                {
                    "doi": "10.1007/s12539-019-00320-3",
                    "version": "1.0",
                    "pmid": "30712176",
                    "type": "Primary",
                    "pmcid": null,
                    "metadata": {
                        "title": "BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus",
                        "abstract": "© 2019, International Association of Scientists in the Interdisciplinary Areas.Nowadays, bioinformatics is one of the most important areas in modern biology and the creation of high-quality scientific software supporting this recent research area is one of the core activities of many researchers. In this context, high-quality sequence datasets are needed to perform inferences on the evolution of species, genes, and gene families, or to get evidence for adaptive amino acid evolution, among others. Nevertheless, sequence data are very often spread over several databases, many useful genomes and transcriptomes are non-annotated, the available annotation is not for the desired coding sequence isoform, and/or is unlikely to be accurate. Moreover, although the FASTA text-based format is quite simple and usable by most software applications, there are a number of issues that may be critical depending on the software used to analyse such files. Therefore, researchers without training in informatics often use a fraction of all available data. The above issues can be addressed using already available software applications, but there is no easy-to-use single piece of software that allows performing all these tasks within the same graphical interface, such as the one here presented, named BDBM (Blast DataBase Manager). BDBM can be used to efficiently get gene sequences from annotated and non-annotated genomes and transcriptomes. Moreover, it can be used to look for alternatives to existing annotations and to easily create reliable custom databases. Such databases are essential to prepare high-quality datasets. The analyses that we have performed on the Coffea canephora genome using BDBM aimed at the identification of the S-locus region (that harbours the genes involved in gametophytic self-incompatibility) led to the conclusion that there are two likely regions, one on chromosome 2 (around region 6600000–6650000), and another on chromosome 5 (around 15830000–15930000). Such findings are discussed in the context of the Rubiaceae gametophytic self-incompatibility evolution.",
                        "citationCount": 1,
                        "authors": [
                            {
                                "name": "Vazquez N."
                            },
                            {
                                "name": "Lopez-Fernandez H."
                            },
                            {
                                "name": "Vieira C.P."
                            },
                            {
                                "name": "Fdez-Riverola F."
                            },
                            {
                                "name": "Vieira J."
                            },
                            {
                                "name": "Reboiro-Jato M."
                            }
                        ],
                        "date": "2019-03-01T00:00:00Z",
                        "journal": "Interdisciplinary Sciences: Computational Life Sciences"
                    }
                }
            ],
            "homepage_status": 0,
            "credit": [
                {
                    "typeRole": [
                        "Contributor"
                    ],
                    "name": "Molecular Evolution Group (IBMC)",
                    "url": "http://evolution.ibmc.up.pt/",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": null,
                    "email": null
                },
                {
                    "typeRole": [
                        "Developer"
                    ],
                    "name": "SING Research Group",
                    "url": "http://www.sing-group.org",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": null,
                    "email": null
                },
                {
                    "typeRole": [
                        "Primary contact"
                    ],
                    "name": null,
                    "url": "http://www.sing-group.org/BDBM/about.html",
                    "note": null,
                    "orcidid": null,
                    "typeEntity": "Person",
                    "email": null
                }
            ],
            "biotoolsCURIE": "biotools:bdbm",
            "elixirPlatform": [],
            "elixirNode": [],
            "version": [
                "1.0.2"
            ],
            "elixir_badge": 0,
            "homepage": "http://www.sing-group.org/BDBM",
            "function": [
                {
                    "note": null,
                    "input": [
                        {
                            "data": {
                                "term": "Database search results",
                                "uri": "http://edamontology.org/data_2080"
                            },
                            "format": []
                        }
                    ],
                    "operation": [
                        {
                            "term": "Database search",
                            "uri": "http://edamontology.org/operation_2421"
                        }
                    ],
                    "cmd": null,
                    "output": []
                }
            ],
            "lastUpdate": "2019-07-22T13:00:28.286202Z",
            "otherID": [],
            "description": "Graphical user interface that allows you to create high quality sequence datasets using the tools included. Using these tools you can perform several common tasks such as doing BLAST alignments, getting the open reading frames of the sequences in a Fasta file or changing the format of a Fasta file. All these task make use of several known tools such as EMBOSS, bedtools, and NCBI's BLAST, Splign and Compart.",
            "toolType": [
                "Desktop application"
            ],
            "editPermission": {
                "type": "private",
                "authors": []
            },
            "language": [
                "Java"
            ],
            "link": [],
            "biotoolsID": "bdbm",
            "additionDate": "2017-01-11T12:47:54Z",
            "name": "BLAST DataBase Manager",
            "license": "GPL-3.0",
            "documentation": [
                {
                    "url": "http://www.sing-group.org/BDBM/manual.html",
                    "note": null,
                    "type": "Manual"
                },
                {
                    "url": "http://www.sing-group.org/BDBM/usecases.html",
                    "note": null,
                    "type": "Training material"
                }
            ],
            "maturity": "Emerging",
            "operatingSystem": [
                "Linux",
                "Windows",
                "Mac"
            ]
        }
    ],
    "next": "?page=2"
}